DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and lgc-38

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001355511.1 Gene:lgc-38 / 3565717 WormBaseID:WBGene00017389 Length:479 Species:Caenorhabditis elegans


Alignment Length:471 Identity:157/471 - (33%)
Similarity:246/471 - (52%) Gaps:66/471 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAV-VRVNIFVRSISKIDDVTMEY 83
            :|...:..|......::||:::.:  :|.||||:    ..||.: |.:...|.:||.:.:|:|:|
 Worm    39 TLGGESNENLENNVTRLLDKLIAS--HDRRIRPN----YGGPPIEVNITAHVTTISAVSEVSMDY 97

  Fly    84 SVQLTFREQWTDERLKFD-DIQGRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFP 147
            ::.|..|:.|.|.||.:: |::..|. :.:.....:|.||.||.|||:..||.....|.::||..
 Worm    98 TLDLYLRQIWKDPRLAWESDVEDSLT-IGIDMVKTIWTPDTFFPNEKKSFFHEATSHNSFLRIDN 161

  Fly   148 NGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRF 212
            :|:||.|||:::|..|||:|..:|||||.|:|.:.|||::|.|:::.|...:.|.:.:|:||..|
 Worm   162 HGNVLRSIRLTVTANCPMSLHTFPLDRQECALEVESYGYSTKDIIYHWHGTNAVTIDENVHLAHF 226

  Fly   213 TLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARV 277
            |:.:..........:||.||.|....||||...:||||||.|..::|::|||||||::.||.|||
 Worm   227 TIGEHKHIERTISLSTGNYSRLTAYFLFKRNIGFYLIQIYFPSSLIVVISWVSFWLNREAVQARV 291

  Fly   278 SLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMH 342
            ::||||:|||.|..:..|||||.|||.|::||:.|||...||.:|||:|.:.|.           
 Worm   292 AIGVTTVLTMTTLMTSTNASLPKVSYVKSLDVFLGVCFFIVFASLLEYAAIGYL----------- 345

  Fly   343 KENMKKKRRDLEQASLDAASDL--LDTDSNATFAMASQFARGG---------------------- 383
               ||:.|      |:.|||.:  .:|:.........:|.||.                      
 Worm   346 ---MKRNR------SVPAASPVQYYETEEFFEIQCHPKFVRGAINYCDGVLKREASRKKSRNRRD 401

  Fly   384 ----GQQKPLVRHPGDPLALEKRLQCEVHMQAPKRP----NCCKTWLSKFPTRSKRIDVISRITF 440
                ..|...:.|......:::|:.....:..|..|    |  ..|   ...|..::|:.||..|
 Worm   402 SSMKNYQNNNIHHRPSDGHVDQRIPLLSMVPMPPIPFKPQN--GAW---GKVRPAQVDLFSRFAF 461

  Fly   441 PLVFALFNLVYWSTYL 456
            |:.|.:|::|||:.|:
 Worm   462 PIFFVIFHIVYWTYYI 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 156/468 (33%)
lgc-38NP_001355511.1 LIC 42..476 CDD:273305 155/465 (33%)
LGIC_ECD_GABAR_RDL-like 76..257 CDD:349809 66/181 (36%)
Cys-loop 177..191 CDD:349809 9/13 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4995
SonicParanoid 1 1.000 - - X271
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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