DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and nAChRalpha6

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster


Alignment Length:527 Identity:106/527 - (20%)
Similarity:201/527 - (38%) Gaps:145/527 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 EKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDER 97
            ||::|:.:|..  |:...||  :.....|..|:..:.::.|..:|:.....:.......:|.|..
  Fly    30 EKRLLNHLLST--YNTLERP--VANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYN 90

  Fly    98 LKFDDIQ-GRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTL 161
            |::::.: |.:|.|.:| .|::|.||:...|..:..|......|:.::  .|||.||........
  Fly    91 LRWNETEYGGVKDLRIT-PNKLWKPDVLMYNSADEGFDGTYHTNIVVK--HNGSCLYVPPGIFKS 152

  Fly   162 ACPMNLKLYPLDRQICSLRMASYGWTTN--DLVFLWKEGDPVQVVKNLHLPRFTLEKFLTD---- 220
            .|.:::..:|.|.|.|.::..|:.:..|  |||...::|.             .|..|:|:    
  Fly   153 TCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGG-------------DLSDFITNGEWY 204

  Fly   221 --YCNSKTNTGEYSCLK---VDLLF----KREFSYYLIQIYIPCCMLVIVSWVSFWL--DQGAVP 274
              ....|.||..|:|..   ||:.|    :|...||...:.:||.::..::.:.|.|  |.|   
  Fly   205 LLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG--- 266

  Fly   275 ARVSLGVTTLLTMATQTSGINASLPP---------VSYTKAIDVWTGV----------------- 313
            .:::||||.||::....:.:..|:|.         |:...::.|:..:                 
  Fly   267 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGT 331

  Fly   314 ---CLTFVFGA--LLEFALVNYASRSGSNKANMHK------------------------------ 343
               |:.|:..:  :|...::||..|:    |::|:                              
  Fly   332 YFNCIMFMVASSVVLTVVVLNYHHRT----ADIHEMPPWIKSVFLQWLPWILRMGRPGRKITRKT 392

  Fly   344 ---ENMKKKRRDLEQASLDAASDLLDTDSNATFAMA-SQFARGGGQQKPLVRHPGDPLALEKR-- 402
               .|..|:....|::|....:::||.|.:....:: ||.|.|.....      |.|..:|:.  
  Fly   393 ILLSNRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASF------GRPTTVEEHHT 451

  Fly   403 -LQC---EVHMQAPKRPNCCKTWLSKFPTRSKRID--------------VISRITFPLVFALFNL 449
             :.|   ::|:...:        |.....|.::.|              |:.|... :||.||.:
  Fly   452 AIGCNHKDLHLILKE--------LQFITARMRKADDEAELIGDWKFAAMVVDRFCL-IVFTLFTI 507

  Fly   450 VYWSTYL 456
            :...|.|
  Fly   508 IATVTVL 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 104/524 (20%)
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 106/527 (20%)
LGIC_ECD_nAChR 55..236 CDD:349798 44/196 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447320
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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