DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and glra1

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_005173152.1 Gene:glra1 / 30676 ZFINID:ZDB-GENE-991117-1 Length:459 Species:Danio rerio


Alignment Length:484 Identity:199/484 - (41%)
Similarity:268/484 - (55%) Gaps:58/484 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GHYFWAILYFASLCSASLANNAKINFREKEKKVLDQILG-AGKYDARIRP---------SGINGT 58
            |.|.|..:.|.||.::..|...|........:.||:::| ...|||||||         |..:||
Zfish     5 GIYLWETIVFFSLAASQQAAARKAASPMPPSEFLDKLMGKVSGYDARIRPNFKVVDPQGSKSDGT 69

  Fly    59 --DGPAV-VRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTEANRVWM 120
              .||.| |..|||:.|...|.:.||:|.|.:..|:||.|.||.:.:.......|..:..:.:|.
Zfish    70 HKKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWK 134

  Fly   121 PDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYG 185
            |||||:|||..:||.:...|..:||..||:|||||||:|.|||||:||.:|:|.|.|.:::.|:|
Zfish   135 PDLFFANEKGANFHEVTTDNKLLRISKNGNVLYSIRITLVLACPMDLKNFPMDVQTCIMQLESFG 199

  Fly   186 WTTNDLVFLWKEGDPVQVVKNLHLPRFTL--EKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYL 248
            :|.|||:|.|.|...|||...|.||:|.|  ||.|. ||....|||:::|::.....:|:..|||
Zfish   200 YTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLR-YCTKHYNTGKFTCIEARFHLERQMGYYL 263

  Fly   249 IQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGV 313
            ||:|||..::||:||||||::..|.||||.||:||:|||.||:||..||||.|||.||||:|..|
Zfish   264 IQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAV 328

  Fly   314 CLTFVFGALLEFALVNYASRSGSNKANMHKE--NMKKKRRDLEQASLDAASDLLDTDSNATFAMA 376
            ||.|||.||||:|.||:.:|       .|||  ..:::||.|::   |.|.|  ...|.|.:.|.
Zfish   329 CLLFVFSALLEYAAVNFIAR-------QHKELLRFQRRRRHLKE---DEAGD--GRFSFAAYGMG 381

  Fly   377 --------SQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRID 433
                    ....:|.....|...:|.:....|.|                    ..|.:|:||||
Zfish   382 PACLQAKDGMAIKGNNNNAPTSTNPPEKTVEEMR--------------------KLFISRAKRID 426

  Fly   434 VISRITFPLVFALFNLVYWSTYLFREEED 462
            .:||:.|||||.:||:.||.||.....||
Zfish   427 TVSRVAFPLVFLIFNIFYWITYKIIRSED 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 195/475 (41%)
glra1XP_005173152.1 LIC 7..448 CDD:273305 194/473 (41%)
Neur_chan_LBD 38..259 CDD:280998 95/221 (43%)
Neur_chan_memb 266..445 CDD:280999 85/210 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 177 1.000 Domainoid score I3541
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20083
Inparanoid 1 1.050 345 1.000 Inparanoid score I2297
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 1 1.000 - - FOG0000759
OrthoInspector 1 1.000 - - otm24998
orthoMCL 1 0.900 - - OOG6_101785
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4995
SonicParanoid 1 1.000 - - X271
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

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