DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluClalpha and Gabrg2

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001380704.1 Gene:Gabrg2 / 29709 RGDID:61966 Length:474 Species:Rattus norvegicus


Alignment Length:440 Identity:144/440 - (32%)
Similarity:230/440 - (52%) Gaps:52/440 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VLDQILGAGKYDARIRPS-GINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLK 99
            :|:.:|..  ||.::||. |:.    |.::..:::|.||..::.:.|||::.:.|.:.|.|.|||
  Rat    68 ILNNLLEG--YDNKLRPDIGVK----PTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLK 126

  Fly   100 FDDIQGRLKYLTLTE--ANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLA 162
            |:   ..:|.|.|..  ..::|:||.||.|.|:...|.|..||..:||:.:|.|||::|:::...
  Rat   127 FN---STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 188

  Fly   163 CPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQV--VKNLHLPRFTLEKFLTDYCNSK 225
            |.:.|..:|:|...|.|..:|||:...::|:.||... |:|  .::..|.:|:...........|
  Rat   189 CQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSS-VEVGDTRSWRLYQFSFVGLRNTTEVVK 252

  Fly   226 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQ 290
            |.:|:|..:.|.....|...|:.||.||||.::|::||||||:::.|||||.|||:||:|||.|.
  Rat   253 TTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTL 317

  Fly   291 TSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQ 355
            ::....|||.|||..|:|::..||..|||.||:|:..::|..   ||:.....::.|||...|..
  Rat   318 STIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFV---SNRKPSKDKDKKKKNPLLRM 379

  Fly   356 ASLDAASDLLD-TDSNATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNC-- 417
            .|..|.:  :| ...:||..|                  .:...|::|.: |...:.....:|  
  Rat   380 FSFKAPT--IDIRPRSATIQM------------------NNATHLQERDE-EYGYECLDGKDCAS 423

  Fly   418 -------CKT--WL-SKFPTRSKRIDVISRITFPLVFALFNLVYWSTYLF 457
                   |:|  |. .:...|..::|..:||.||..|.|||||||.:||:
  Rat   424 FFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFFPTAFCLFNLVYWVSYLY 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 142/436 (33%)
Gabrg2NP_001380704.1 LIC 68..471 CDD:273305 142/436 (33%)
LGIC_ECD_GABAAR_G 89..270 CDD:349801 55/184 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.