DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and Gabra6

DIOPT Version :10

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_068613.2 Gene:Gabra6 / 29708 RGDID:61861 Length:453 Species:Rattus norvegicus


Alignment Length:460 Identity:160/460 - (34%)
Similarity:235/460 - (51%) Gaps:72/460 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FREKEKKVLDQILGAGKYDARIRPSGINGTDGPAV--VRVNIFVRSISKIDDVTMEYSVQLTFRE 91
            :.|...::||.:|..  ||.|:|| |..|    ||  |:.:|:|.|...:.||.|||::.:.||:
  Rat    28 YSENVSRILDNLLEG--YDNRLRP-GFGG----AVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQ 85

  Fly    92 QWTDERLKFDDIQGRLKYLTLTE--ANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYS 154
            .||||||||   :|..:.|:|..  .:::|.||.||.|.|:...||:..||...|:..||::||:
  Rat    86 TWTDERLKF---KGPAEILSLNNLMVSKIWTPDTFFQNGKKSIAHNMTTPNKLFRLMQNGTILYT 147

  Fly   155 IRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKFLT 219
            :|:::...|||.|..:|:|...|.|:..||.:..:::::.||:| |:..|:   :|..:......
  Rat   148 MRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKG-PLYSVE---VPEESSSLLQY 208

  Fly   220 DYCNS-------KTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARV 277
            |....       |:|||||..:.|....:|:..|::||||.||.|.||:|.||||:::.:||||.
  Rat   209 DLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPART 273

  Fly   278 SLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMH 342
            ..|:||:|||.|.:.....|||.|||..|:|.:..||..|||.||:|||.|||.:...|.||...
  Rat   274 VFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQKAERQ 338

  Fly   343 KENMKK----KRRDLEQASLDAASDLLDTDSNATFAMASQFARGGGQQKPLVRHPGDPLALEKRL 403
            .:...|    |.:..|  ||:|                           .:|.|......|:||:
  Rat   339 AQTAAKPPVAKSKTTE--SLEA---------------------------EIVVHSDSKYHLKKRI 374

  Fly   404 Q------------CEVHMQAPKRPNCCKTWLSKFPT--RSKRIDVISRITFPLVFALFNLVYWST 454
            .            .:|..:.|..|:...|.....|.  .:.:||..|||.||:.||.||||||..
  Rat   375 SSLTLPIVPSSEASKVLSRTPILPSTPVTPPLLLPAIGGTSKIDQYSRILFPVAFAGFNLVYWIV 439

  Fly   455 YLFRE 459
            ||.::
  Rat   440 YLSKD 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 158/454 (35%)
Gabra6NP_068613.2 LIC 34..440 CDD:455710 157/448 (35%)
LGIC_ECD 42..239 CDD:475126 72/210 (34%)

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