DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and GABRD

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_016856425.1 Gene:GABRD / 2563 HGNCID:4084 Length:687 Species:Homo sapiens


Alignment Length:441 Identity:146/441 - (33%)
Similarity:226/441 - (51%) Gaps:56/441 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFD 101
            ||.:: || |....|| ||.|.  |..|.:.:.|.||..|.:..|||::.:...:.|.|.||.::
Human   279 LDGLI-AG-YARNFRP-GIGGP--PVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSYN 338

  Fly   102 DIQGRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMN 166
            .....|. |.....:::|:||.|..|.|...||::.:.|..||:.|:|.:||||||:.|:||.|:
Human   339 HTNETLG-LDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMD 402

  Fly   167 LKLYPLDRQICSLRMASYGWTTNDLVFLWKEG-DPVQVVKNLHLPRFTLE--KFLTDYCNSKTNT 228
            |..||:|.|.|.|.:.|||:::.|:|:.|.|. :.:..:..|.|.:||:.  :|.|:..|.| :.
Human   403 LAKYPMDEQECMLDLESYGYSSEDIVYYWSESQEHIHGLDKLQLAQFTITSYRFTTELMNFK-SA 466

  Fly   229 GEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSG 293
            |::..|.:....:|....|:||.|:|..:||.:||||||:.|.|||||||||:||:|||.|....
Human   467 GQFPRLSLHFHLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVS 531

  Fly   294 INASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQASL 358
            ..:|||..|..||:||:..:|..|||.||:|:|..::       .|:..|:...|.:....:|.:
Human   532 ARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHF-------NADYRKKQKAKVKVSRPRAEM 589

  Fly   359 DAASDLLDTDSNATFAMASQFARGGGQQKPLVRH----PGDPLALEKRLQCEV------------ 407
            |..:.::         :.|..|.|..|:..:.|.    ||:.:...:.:..|.            
Human   590 DVRNAIV---------LFSLSAAGVTQELAISRRQRRVPGNLMGSYRSVGVETGETKKEGAARSG 645

  Fly   408 ---HMQAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFALFNLVYWSTY 455
               .::|..||....|           ||:.:|..||..||..|::||:.|
Human   646 GQGGIRARLRPIDADT-----------IDIYARAVFPAAFAAVNVIYWAAY 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 145/439 (33%)
GABRDXP_016856425.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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