DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and Glrb

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_445748.1 Gene:Glrb / 25456 RGDID:2706 Length:496 Species:Rattus norvegicus


Alignment Length:462 Identity:163/462 - (35%)
Similarity:255/462 - (55%) Gaps:65/462 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VLDQILGAGKYDARIRPS--GINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERL 98
            :|:::|.:  ||.||||:  ||     |..|.||||:.|...|.:.||:|.|.:..|::|.|.||
  Rat    59 ILNRLLVS--YDPRIRPNFKGI-----PVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRL 116

  Fly    99 KF-DDIQGRLKYLTL--TEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLT 160
            |. .|.:|. ..||:  |....:|.|||||:|||..:||::...|:.:.||.:|.||.|:|:|:|
  Rat   117 KLPSDFRGS-DALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSMRLSIT 180

  Fly   161 LACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKFLTDYCNSK 225
            |:||::|.|:|:|.|.|.:::.|:|:||:||.|:|:.|||||:.| :.||:|.::|...:|.|..
  Rat   181 LSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQLEK-IALPQFDIKKEDIEYGNCT 244

  Fly   226 ---TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTM 287
               ..||.|:|::|....:|:..:|::.:|.|..::|::||:|||::..|..|||.||:.::|::
  Rat   245 KYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSL 309

  Fly   288 ATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALV----NYASRSGSNKANMHKE---- 344
            |::.:.:.|.||.|||.||:|||...||.|.|.:|:|:|:|    |...|..:.||.:.|.    
  Rat   310 ASECTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVMLNNPKRVEAEKARIAKAEQAD 374

  Fly   345 ----NMKKKR------RDLEQASLD-----------AASDLLDTDSNATFAMASQFARGG----G 384
                |..||.      ..:..::|.           :.|||...|.:...::...|....    |
  Rat   375 GKGGNAAKKNTVNGTGTPVHISTLQVGETRCKKVCTSKSDLRSNDFSIVGSLPRDFELSNYDCYG 439

  Fly   385 QQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFALFNL 449
            :...:....|.|.|..|:       ..|.:|        ..||.:||||:.:|..||..|..||:
  Rat   440 KPIEVNNGLGKPQAKNKK-------PPPAKP--------VIPTAAKRIDLYARALFPFCFLFFNV 489

  Fly   450 VYWSTYL 456
            :|||.||
  Rat   490 IYWSIYL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 161/459 (35%)
GlrbNP_445748.1 LIC 43..495 CDD:273305 161/459 (35%)
LGIC_ECD_GlyR_beta 79..265 CDD:349811 78/187 (42%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 247..253 2/5 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I3542
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 341 1.000 Inparanoid score I2275
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46272
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X271
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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