DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and lgc-57

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:457 Identity:155/457 - (33%)
Similarity:227/457 - (49%) Gaps:60/457 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 EKEKKVLD--QIL-GAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQ 92
            |::.|:.|  :|| ..|.|:....|  :...|....|.:.:::..:|.....:|::.|.:.|:|:
 Worm    34 EEDFKIDDVTRILKRVGNYNRNAYP--LLDQDLATHVDIQMYIEGMSSFHAQSMDFQVDIYFQEK 96

  Fly    93 WTDERLKFDDIQGRL----KYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLY 153
            |.|.||:.::.:..|    |...|     :|.|||:|:|.:...||::..||..:.|:|||:|.|
 Worm    97 WVDHRLQHNNTKRILVKDPKLFGL-----LWHPDLYFANARTASFHDVTQPNFLVWIYPNGTVWY 156

  Fly   154 SIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLE--K 216
            ..|||||:.|..:|..||||.|.|.||:.||.:....|:..|..|:||:|.:.:.:|...|:  |
 Worm   157 DCRISLTVLCMQDLARYPLDSQNCGLRILSYAYDEEQLIIRWNGGNPVEVNRGIRMPDMHLKHIK 221

  Fly   217 FLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGV 281
            |.|.  ..|..||.:|....:....||.::::||.|||..::||:||.|||||..|||.||||.:
 Worm   222 FYTK--RDKYATGIWSSAVAEFHVDREITHHIIQSYIPTSLIVIISWFSFWLDVEAVPGRVSLSI 284

  Fly   282 TTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENM 346
            |||||:|||:|....:||..|..||||||.|.|:.|||.|::||.:|||..|        .|...
 Worm   285 TTLLTLATQSSAARMALPQASDVKAIDVWMGTCMAFVFSAMIEFTVVNYCVR--------RKVRT 341

  Fly   347 KKKRRDLEQASLDAASD--------------------LLDTDSNATFA--MASQFARGGGQQKPL 389
            |.|.|.|.:...|..:.                    |...:.|||..  ...:..|...|....
 Worm   342 KIKPRGLSEQVHDMVAQYREKKDKFNNGNCEISYEMALQPNEDNATVQRNFEKKEVREMNQASLF 406

  Fly   390 VRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFALFNLVYWST 454
            ||....|.:..|.::..::.....|.|            :::||..||..|||.|.:||:.||..
 Worm   407 VRRSLLPTSKRKTIEDRINRVEENRKN------------AQKIDRYSRALFPLAFIIFNIFYWIY 459

  Fly   455 YL 456
            ||
 Worm   460 YL 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 153/454 (34%)
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 59/180 (33%)
LIC 44..460 CDD:273305 150/444 (34%)
Neur_chan_memb 255..457 CDD:280999 77/221 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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