DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and lgc-54

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001343648.1 Gene:lgc-54 / 188525 WormBaseID:WBGene00020528 Length:493 Species:Caenorhabditis elegans


Alignment Length:456 Identity:122/456 - (26%)
Similarity:223/456 - (48%) Gaps:25/456 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTME 82
            :|.:.|...::..|.....:.|::....:|.....:.:.......||.|...:::|:::.:::..
 Worm    32 TAPIENYDWMHCDEPANDTISQLVLRRLFDDNYNKNTVPLKTSATVVSVEFGIQNIAQVSEISAS 96

  Fly    83 YSVQLTFREQWTDERLKFDDIQGRLKYLTL--TEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRI 145
            :::.|.|.:.|.|.||:||.:...|:.|||  :...::|.|::.|.|.|:...|:...||:::.|
 Worm    97 FTLDLLFSQIWHDPRLRFDHLTNCLQNLTLGYSMVEKLWTPNVCFVNSKKTEIHSSPTPNIFLMI 161

  Fly   146 FPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLP 210
            :|||:|..:.|:.:...|.::|.|:|:|...|.|.:.||.:....:...|:|..||..:....|.
 Worm   162 YPNGTVWVNYRLQVQSPCMVDLVLFPMDIMNCELIIESYAYNAAKVKLNWREWQPVFSIAKSKLS 226

  Fly   211 RFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPA 275
            .|||........:.:...|::..|.|.|.|.|.:.:|::|:|||....|.:|:||||:|..|:||
 Worm   227 DFTLYGLQWTKNSFEYAAGQWDQLTVSLTFSRAYGFYILQMYIPTYSSVFLSFVSFWIDLKALPA 291

  Fly   276 RVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKAN 340
            |::|||::|:.:..|...:..:||.|.|.|:|||:..:...|:|..::|.|.|.|.. |.:|...
 Worm   292 RITLGVSSLMALTFQYGNVAKNLPRVGYVKSIDVYMVLTTAFIFLTMIEVAFVCYLD-SENNLRR 355

  Fly   341 MHKENMKKKRRDLEQASLDAASDLLDTDSNATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQC 405
            ..::..|||.|   .|.|....|....:..||....:..|     :..|..:..:|.:.......
 Worm   356 KERQAEKKKER---VAVLQRKKDRKKNNYGATTVTNANAA-----ESDLRSNYDEPFSQNGTTSH 412

  Fly   406 EVHMQAPKRPNCCKTW--LSKF-----------PTRSKRIDVISRITFPLVFALFNLVYWSTYLF 457
            ::.: :.:..|..::.  |::|           ...::.:|...|..|||.|...||:||..||:
 Worm   413 KISI-SRQANNMFESLHALAQFGLLTDDDDENTKWTAQNVDKFCRKAFPLSFCFLNLIYWCYYLY 476

  Fly   458 R 458
            :
 Worm   477 Q 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 120/451 (27%)
lgc-54NP_001343648.1 Neur_chan_LBD 55..474 CDD:332142 116/428 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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