DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and lgc-39

DIOPT Version :10

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_504821.3 Gene:lgc-39 / 184265 WormBaseID:WBGene00017314 Length:563 Species:Caenorhabditis elegans


Alignment Length:480 Identity:137/480 - (28%)
Similarity:231/480 - (48%) Gaps:48/480 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LCS--ASLANNAKINFREKEKKVLDQILGAG----KYDARIRPSGING--TDGPAVVRVNIFVRS 72
            ||.  .|.....::.:.|...::| :::|.|    .|:..:.|....|  ||    |.|.:::.|
 Worm    99 LCEPHKSGGQTGELKWSESGDRLL-KVIGNGVVEDGYNMFMAPGQSQGKRTD----VHVAVYIES 158

  Fly    73 ISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTEANRVWMPDLFFSNEKEGHFHNII 137
            :|.....:|::.|.:.....|.|.||..:.....|....|. |:|:|.|||:|.|.|..:...:.
 Worm   159 MSSFKAQSMDFEVDMYLAMGWFDRRLAHNCTHPILVTSKLI-ADRIWYPDLYFVNSKYAYLQEVT 222

  Fly   138 MPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQ 202
            .||:.:.::|:|.:..::|:.:||:|.|:|||:|||.|.|.|.:.|:.:....:...|::..|..
 Worm   223 TPNLMVIVYPDGLIFKTMRLDVTLSCMMDLKLFPLDYQECPLTIQSFAYIEQIVNLTWRDDPPNF 287

  Fly   203 VVK-----NLHLPRFTLEKFLTDYCNSKTNTGE--YSCLKVDLLFKREFSYYLIQIYIPCCMLVI 260
            .:.     .|:..:.|.::|:..........||  :||::..::.||...:::||.|||..|||.
 Worm   288 PIGFNPDIKLNDMQITNKRFVKCAGPYPMFRGEAAWSCIQGYIVMKRLVLFHIIQTYIPTGMLVS 352

  Fly   261 VSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEF 325
            :||:|||||..|.|||:||.:|:|||:.|.::|....||.|||.||:|:|.......:|..|||:
 Worm   353 ISWMSFWLDPRASPARISLTITSLLTLTTMSNGARQDLPQVSYIKALDIWLTFSQALIFLVLLEY 417

  Fly   326 ALVNY----ASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTDSNATFAMASQFARGGGQQ 386
            :.|:|    .:...|::...::|.:::.:|: |:|.....::.....:|.|  ..|...|....|
 Worm   418 SFVSYYMTKRTTDCSHRNMFYEERVQECKRE-EKARKSIVNNNKPVIANNT--EGSDLNRNKKSQ 479

  Fly   387 KPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSK-------------RIDVISRI 438
            :..:.| |....|.:..........|.|      ..:||.|...             :||..||.
 Worm   480 QFSLTH-GISACLNESSALMSVTPVPSR------LFTKFDTNKPCARCSEKNERIAFKIDEYSRW 537

  Fly   439 TFPLVFALFNLVYWSTYLFREEEDE 463
            .||.||:||.:.||..:.:|....|
 Worm   538 LFPTVFSLFCVSYWLYFTWRSSASE 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 135/470 (29%)
lgc-39NP_504821.3 LIC 119..554 CDD:455710 131/450 (29%)

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