DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluClalpha and avr-14

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001020963.1 Gene:avr-14 / 172270 WormBaseID:WBGene00000232 Length:430 Species:Caenorhabditis elegans


Alignment Length:466 Identity:213/466 - (45%)
Similarity:284/466 - (60%) Gaps:59/466 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WAILYFASLCSASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGING----TDGPAVVRVNI 68
            |.......|...|:.::.:...:.||::::.:||  ..||.|:||.|:|.    |.||.:|.|||
 Worm     2 WHYRLTTILLIISIIHSIRAKRKLKEQEIIQRIL--KDYDWRVRPRGMNATWPDTGGPVLVTVNI 64

  Fly    69 FVRSISKIDDVTMEYSVQLTFREQWTDERLKFD--DIQGRLK---YLTLT------EANRVWMPD 122
            ::|||||||||.||||.|.||||:|||:||.::  :..|..:   ::.|.      ::.::||||
 Worm    65 YLRSISKIDDVNMEYSAQFTFREEWTDQRLAYERYEESGDTEVPPFVVLATSENADQSQQIWMPD 129

  Fly   123 LFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWT 187
            .||.||||...|.|..|||.|||..||.:|||:|:||.|:|||:|:.||||||.|.:.:|||.:|
 Worm   130 TFFQNEKEARRHLIDKPNVLIRIHKNGQILYSVRLSLVLSCPMSLEFYPLDRQNCLIDLASYAYT 194

  Fly   188 TNDLVFLWKEGDPVQVVKNLH--LPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQ 250
            |.|:.:.|||..|:|....|.  ||.|.|:..:||||.|.||||||||.:|.|..:||:||||||
 Worm   195 TQDIKYEWKEKKPIQQKDGLRQSLPSFELQDVVTDYCTSLTNTGEYSCARVVLRLRREYSYYLIQ 259

  Fly   251 IYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCL 315
            :||||.|||:|||||||||:.||||||||||||||||.||.||||:.||||||.||:|||.||||
 Worm   260 LYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCL 324

  Fly   316 TFVFGALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTDSNATFAMASQFA 380
            .|:||||||:|:|||..|    |..:.||..||.|.|......|.....||..:..:.       
 Worm   325 AFIFGALLEYAVVNYYGR----KEFLRKEKKKKTRIDDCVCPSDRPPLRLDLSAYRSV------- 378

  Fly   381 RGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFA 445
                ::.|:::...:.|:....:                         |:|:|::||:||||.|.
 Worm   379 ----KRLPIIKRISEILSTNIDI-------------------------SRRVDLMSRLTFPLTFF 414

  Fly   446 LFNLVYWSTYL 456
            .|.:.|:..|:
 Worm   415 SFLIFYYVAYV 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 212/463 (46%)
avr-14NP_001020963.1 LIC 20..424 CDD:273305 209/445 (47%)
Neur_chan_LBD 27..253 CDD:280998 112/227 (49%)
Neur_chan_memb 260..>355 CDD:280999 70/98 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 214 1.000 Domainoid score I1584
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20083
Inparanoid 1 1.050 383 1.000 Inparanoid score I1176
Isobase 1 0.950 - 0 Normalized mean entropy S3705
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 1 1.000 - - FOG0000759
OrthoInspector 1 1.000 - - otm14182
orthoMCL 1 0.900 - - OOG6_101785
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X271
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.930

Return to query results.
Submit another query.