DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and Gabra5

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001349090.1 Gene:Gabra5 / 110886 MGIID:95617 Length:463 Species:Mus musculus


Alignment Length:440 Identity:158/440 - (35%)
Similarity:236/440 - (53%) Gaps:52/440 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 KVLDQILGAGKYDARIRPSGINGTDGPAV--VRVNIFVRSISKIDDVTMEYSVQLTFREQWTDER 97
            ::||.:|..  ||.|:|| |:    |..:  ||.:|:|.|...:.|..|||::.:.||:.|.|||
Mouse    51 RILDGLLDG--YDNRLRP-GL----GERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDER 108

  Fly    98 LKFDDIQGRLKYLTLTE--ANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLT 160
            |:|   :|.::.|.|..  |:::|.||.||.|.|:...||:..||..:|:..:|::||::|::::
Mouse   109 LRF---KGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTIS 170

  Fly   161 LACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVV--------KNLHLPRFTLEKF 217
            ..|||.|:.:|:|...|.|:..||.:..:::|::|..|....||        ...||...|:.  
Mouse   171 AECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTVG-- 233

  Fly   218 LTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVT 282
             |:  |..|:||||:.:......||:..|::||.|:||.|.||:|.|||||::.:||||...|||
Mouse   234 -TE--NISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVT 295

  Fly   283 TLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSG---SNKANMHKE 344
            |:|||.|.:.....|||.|:|..|:|.:..||..|||.||:|||.|||.::.|   ..|..:...
Mouse   296 TVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAA 360

  Fly   345 NMKKKRRDLEQASLDAASDLLDTDSNATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHM 409
            .:|||.|:|          :|:..:||       |..|.....|.:.....|..........:..
Mouse   361 KIKKKEREL----------ILNKSTNA-------FTTGKLTHPPNIPKEQPPAGTANAPTVSIKA 408

  Fly   410 QAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFALFNLVYWSTYLFRE 459
            ...|.....||:.|     ..:||.:|||.||::|..||||||:|||.||
Mouse   409 SEEKTAESKKTYNS-----ISKIDKMSRIVFPILFGTFNLVYWATYLNRE 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 153/434 (35%)
Gabra5NP_001349090.1 LIC 15..449 CDD:273305 153/434 (35%)
LGIC_ECD_GABAAR_A5 58..256 CDD:349839 70/212 (33%)
Cys-loop 173..187 CDD:349839 6/13 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..408 2/20 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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