DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and gabrp

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_017948119.2 Gene:gabrp / 100498164 XenbaseID:XB-GENE-1012959 Length:401 Species:Xenopus tropicalis


Alignment Length:426 Identity:145/426 - (34%)
Similarity:228/426 - (53%) Gaps:55/426 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 YDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYL 110
            |:..:||   ...:.|..:.|::.|.||..:.:..|:|:..:..|::||||||.|:..:......
 Frog    14 YNKYLRP---KFNEKPIEIAVSLEVASIDAVSEENMDYTATINLRQRWTDERLVFEGNRSITLDA 75

  Fly   111 TLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQ 175
            .|.|:  :|:||.:..:.|:...|::.:.|..:|:|.||:|||:|||:.|:||.|:|..||:|||
 Frog    76 RLVES--LWVPDTYIVDSKKSFLHDVTVENRLVRLFANGTVLYAIRITTTVACKMDLTKYPMDRQ 138

  Fly   176 ICSLRMASYGWTTNDLVFLW-KEGDPVQVVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLL 239
            .|.|::.|:|::..||.::| :..|.|:.:.:|.|.::|:|::.|.....|..||.|..|.:..:
 Frog   139 TCKLQLESWGYSEKDLTYVWMRANDSVRGMDHLQLAQYTVEQYYTTNSIGKDETGNYPRLALCFI 203

  Fly   240 FKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVS-Y 303
            .:|...|::::.|||..:||::||||||:...:||||...||||:|.|.|...|...:.|..: .
 Frog   204 LRRNVVYFILETYIPSALLVVLSWVSFWISMSSVPARTCFGVTTVLAMTTIMMGSRFNFPTANCI 268

  Fly   304 TKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTD 368
            .|||||:.|:|.:||||||||:|..:|.|...|      ..|.:|.:..||:...|.:|.|:..|
 Frog   269 IKAIDVYLGICFSFVFGALLEYAFAHYCSELNS------AVNKEKIKNSLEEPEHDISSVLIACD 327

  Fly   369 SNATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPN-----CCKTW------- 421
            |                 |.|.|         |..|.|   .||::.:     ..|.|       
 Frog   328 S-----------------KQLNR---------KENQTE---NAPEKNSLKNSVIFKLWLKIKIIR 363

  Fly   422 LSKF-PTRSKRIDVISRITFPLVFALFNLVYWSTYL 456
            |.|| .|..:.:|..||..|||:|.:.|::||:.||
 Frog   364 LKKFNVTNPENVDRYSRTVFPLIFLIINIIYWTYYL 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 143/423 (34%)
gabrpXP_017948119.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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