DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and gabrb1

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_002664179.2 Gene:gabrb1 / 100331377 ZFINID:ZDB-GENE-090313-230 Length:484 Species:Danio rerio


Alignment Length:458 Identity:160/458 - (34%)
Similarity:242/458 - (52%) Gaps:55/458 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KKVLDQILGAGKYDARIRPSGINGTDGPAV-VRVNIFVRSISKIDDVTMEYSVQLTFREQWTDER 97
            |..:|::|..  ||.|:||.    ..||.| |.::|.:.||..:.:|.|:|::.:.|::.|.|:|
Zfish    46 KVTVDKLLKG--YDIRLRPD----FGGPPVDVGMSIDISSIDMVSEVNMDYTITMYFQQSWRDKR 104

  Fly    98 LKFDDIQGRLKYLTLTEANRV----WMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRIS 158
            |.:..|.     |.||..|||    |:||.:|.|:|:...|.:.:.|..||:.|:|:|||.:||:
Zfish   105 LSYTGIP-----LNLTLDNRVADQLWVPDTYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLRIT 164

  Fly   159 LTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKFLTDYCN 223
            .|.||.|:|:.||||.|.|:|.:.|||:||:|:.|.|:.|..|..|.|:.||:|::..:.|....
Zfish   165 TTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWQGGSSVTGVDNIELPQFSIIDYKTLSKK 229

  Fly   224 SKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMA 288
            ....||.|..|.:....||...|:::|.|:|..::.|:||||||::..|..|||:||:||:|||.
Zfish   230 VVFATGSYPRLSLSFKLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMT 294

  Fly   289 TQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNY--------ASRSGSNKANMHKEN 345
            |..:.:..:||.:.|.||||::...|..|||.||||:|.|||        ..:..:.||  .|.|
Zfish   295 TINTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKVAEKA--AKSN 357

  Fly   346 MKKKRRDLEQASLD--------------AASDLLDTDSNATFAMASQFARGGGQQKPLVRHP--G 394
            .:|.|.:..:..:|              :.:::|....:....|.|..:.....:|||....  |
Zfish   358 NEKSRLESNKVQVDVHGSIPLTNLDLRLSGAEMLGALGDPRNTMFSYDSASIQYRKPLTGRDLYG 422

  Fly   395 DPLA-LEKRLQCEVHMQAPKRPNCCKTWLS---KFP--TRSKRIDVISRITFPLVFALFNLVYWS 453
            .|.| :|:.|       |||:....:....   |.|  |....||..||:.||:.:..||||||.
Zfish   423 RPTASIERPL-------APKKSRLRRRAAQLKVKIPDLTDVNAIDKWSRVIFPITYTFFNLVYWL 480

  Fly   454 TYL 456
            .|:
Zfish   481 YYV 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 159/455 (35%)
gabrb1XP_002664179.2 LIC 19..482 CDD:273305 159/455 (35%)
Neur_chan_LBD 49..250 CDD:280998 80/211 (38%)
Neur_chan_memb 257..479 CDD:280999 74/230 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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