DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluClalpha and gabra2

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_002933509.2 Gene:gabra2 / 100170583 XenbaseID:XB-GENE-1000398 Length:451 Species:Xenopus tropicalis


Alignment Length:467 Identity:170/467 - (36%)
Similarity:253/467 - (54%) Gaps:53/467 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YFWAILYFAS--LCSASLANNAKIN---FREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVR 65
            :|..:|:.:|  :...::.|:||.|   |    .::||::|..  ||.|:|| |:.  |....|.
 Frog    15 FFTLVLWESSSQVLGDTVDNDAKNNITIF----TRILDRLLDG--YDNRLRP-GLG--DRVTEVH 70

  Fly    66 VNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTE--ANRVWMPDLFFSNE 128
            .:|:|.|...:.|..|||::.:.||:.|.||||:|   :|.:..|.|..  ||::|.||.||.|.
 Frog    71 TDIYVTSFGPVSDTDMEYTIDVFFRQNWQDERLRF---KGPMHILRLNNLMANKIWTPDTFFHNG 132

  Fly   129 KEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVF 193
            |:...||:.|||..:||..:|::||::|:::...|||:|:.:|:|...|.|:..||.:||:::.:
 Frog   133 KKSIAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHACPLKFGSYAYTTSEVTY 197

  Fly   194 LWKEGDPVQVV---KNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 255
            :|.......||   ....|.::.|...|......|::||||:.:......||:..|::||.|:||
 Frog   198 VWTRNATESVVVAPDGSRLNQYVLLGHLVGKETIKSSTGEYTVMTTHFHLKRKIGYFVIQTYLPC 262

  Fly   256 CMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFG 320
            .|.||:|.|||||::.:||||...||||:|||.|.:.....|||.|:|..|:|.:..||..|||.
 Frog   263 IMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFS 327

  Fly   321 ALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTDSNATFAMA-SQFARGGG 384
            ||:|||.|||.::.|.........|.|||    |:||:        ...|..:|:| :.:|    
 Frog   328 ALIEFATVNYFTKRGWAWDGKSVVNDKKK----EKASV--------IKKNNAYAVAVANYA---- 376

  Fly   385 QQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSK--FPTRSKRIDVISRITFPLVFALF 447
                       |...:......:...|...||..|...:|  |.:.|| ||.:|||.|||:|..|
 Frog   377 -----------PNITKDSALPTISKSATADPNKAKPQEAKKTFNSVSK-IDRMSRIVFPLLFGTF 429

  Fly   448 NLVYWSTYLFRE 459
            |||||:|||.||
 Frog   430 NLVYWATYLNRE 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 165/461 (36%)
gabra2XP_002933509.2 LIC 12..437 CDD:273305 165/461 (36%)
LGIC_ECD_GABAAR_A2 48..250 CDD:349836 72/209 (34%)
Cys-loop 167..181 CDD:349836 6/13 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11456
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.