DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and NUP58

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_054808.1 Gene:NUP58 / 9818 HGNCID:20261 Length:599 Species:Homo sapiens


Alignment Length:560 Identity:176/560 - (31%)
Similarity:251/560 - (44%) Gaps:122/560 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TTNNAIGGATAATGAFAFGARPATTTAPPPSFGAATSTPTFGAAPATTSLFAAPAATPAFGAPAA 69
            :|..|.|| |:..|.|:||...::..:...:||...||.|    |||||   ||::  .||    
Human    14 STTVAAGG-TSTGGVFSFGTGASSNPSVGLNFGNLGSTST----PATTS---APSS--GFG---- 64

  Fly    70 TPAFGAPASTPGF--GATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPA 132
            |..||:..:| ||  |.|:|......|...|  .|.||.||              |||..|..  
Human    65 TGLFGSKPAT-GFTLGGTNTGIATTITTGLT--LGTPATTS--------------AATTGFSL-- 110

  Fly   133 ATPAFGAPAATSAFGAPAATTAFGAP-ASTQASAFGAPAPAVGTVAPTFSFATPATSAPTTAPPA 196
               .|..|||::        |.|..| .||.||..            |.|.|..:|.|.:|    
Human   111 ---GFNKPAASA--------TPFALPITSTSASGL------------TLSSALTSTPAAST---- 148

  Fly   197 FGF------GTTATTAAAAMPASLSSGIGSFSFPKPQATTAASLNFNTTTTTATAQPFNTGLKLG 255
             ||      ||||||..|:...||...:         |....||..:|.|.|:.......||.||
Human   149 -GFTLNNLGGTTATTTTASTGLSLGGAL---------AGLGGSLFQSTNTGTSGLGQNALGLTLG 203

  Fly   256 TTNATTTLGGGGIFSKPAGQAAAPAASTFVGLGGIDVTAT----QPKLGDNKQDGIKIKETQVPD 316
            ||.||:|.|.                   .||||||.:::    ..|.|...:|...:|:..:|.
Human   204 TTAATSTAGN-------------------EGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPP 249

  Fly   317 EIIKTVDGLKAYIKQQKTISSDIGRTSTSKFTNVSHEITNLKWALQNMATLVEGSNQQIRLMRQE 381
            .|.:.|:.|:.::|:||.:..:|.|.|:.....|..:|..||..|...|..::.:...|..::.|
Human   250 VICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIE 314

  Fly   382 TVKAIQSLEMAQRTQDTPAGLQFENNAPFQYFQCLVAKYEQDLIAFRQQIALTERHMHAISNPQS 446
            |.:.:::.|:|.|||.||.|||.|..||..||:.||.::|..|..:||||...|.|:...:|...
Human   315 TAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNSH 379

  Fly   447 ISPDDLKRGFRQLNESFISLAGRLHEVHQRVEEHKEHYLNLRRYRLRDTTNVFE-------RIDN 504
            |:|.||....:::.::|::||.:|..:|:.|:..||.||..|:..|.|..:|||       :..|
Human   380 ITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQN 444

  Fly   505 PPLPTVEPQRISSGPTPFSNISALMNKSYAAAASSASNAT 544
            .|       |:::||||||.:      ..|||.:.|:..|
Human   445 TP-------RVTTGPTPFSTM------PNAAAVAMAATLT 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 51/172 (30%)
Nucleoporin_FG2 136..>525 CDD:374260 128/406 (32%)
NUP58NP_054808.1 Nucleoporin_FG2 3..599 CDD:406391 176/560 (31%)
14 X 2 AA repeats of F-G 7..579 176/560 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..247 10/52 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 579..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154010
Domainoid 1 1.000 192 1.000 Domainoid score I3236
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 193 1.000 Inparanoid score I3861
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52677
OrthoDB 1 1.010 - - D379076at33208
OrthoFinder 1 1.000 - - FOG0006833
OrthoInspector 1 1.000 - - oto90725
orthoMCL 1 0.900 - - OOG6_105706
Panther 1 1.100 - - LDO PTHR13437
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.900

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