DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and NUP100

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_012855.1 Gene:NUP100 / 853796 SGDID:S000001551 Length:959 Species:Saccharomyces cerevisiae


Alignment Length:571 Identity:127/571 - (22%)
Similarity:193/571 - (33%) Gaps:153/571 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ATGAFAFGARPATTTAPPPSFGAATST---PTFGAAPATTSLFAAPAATPAFGAPAAT--PAFGA 75
            :||  .|||:||.||.  ..||..:||   ..||.....||...:......|||...|  |..|.
Yeast   391 STG--LFGAKPAGTTG--SLFGGNSSTQPNSLFGTTNVPTSNTQSQQGNSLFGATKLTNMPFGGN 451

  Fly    76 P-ASTPGFGATSTAAPAFGTAAATPAFGIPAAT--SAFGAPAATPAFGAAAATPAFGAPAATPAF 137
            | |:..|.|.:     .|||.        ||:|  |.||...|:..           .|:....|
Yeast   452 PTANQSGSGNS-----LFGTK--------PASTTGSLFGNNTASTT-----------VPSTNGLF 492

  Fly   138 GAPAATSAFGAPAATTAFGAPASTQASAFGAPAPAVGTVAPTFSFATPATSAPTTAPPAFGFGTT 202
            |..|..|.  :...|..|||...:|:.      ||:|  ...|..:...:|......|.|| |||
Yeast   493 GNNANNST--STTNTGLFGAKPDSQSK------PALG--GGLFGNSNSNSSTIGQNKPVFG-GTT 546

  Fly   203 ATTAAAAMPASLSSGIGSFSFPKPQATTAASLNFNTTTTTATAQPFNTGLKLGTTNATTTLGGGG 267
            ..|.......:.||.:||                             ||...|..|.|..:|...
Yeast   547 QNTGLFGATGTNSSAVGS-----------------------------TGKLFGQNNNTLNVGTQN 582

  Fly   268 IFSKPAGQAAAPAASTFVGLGGIDVTATQPKLGDNKQDGIKIKETQVPDEIIK----TVDGLKAY 328
            :  .|.......|.     ||...|.:.|.....|:|...||   .:|:.|..    |...:.|.
Yeast   583 V--PPVNNTTQNAL-----LGTTAVPSLQQAPVTNEQLFSKI---SIPNSITNPVKATTSKVNAD 637

  Fly   329 IKQQKTISSDI---------------------GRT--STSKFTNVSHEITNLKWALQNMATLVEG 370
            :|:..:::|..                     |:|  .:.:.::.|:.||:.:.:..|...|:..
Yeast   638 MKRNSSLTSAYRLAPKPLFAPSSNGDAKFQKWGKTLERSDRGSSTSNSITDPESSYLNSNDLLFD 702

  Fly   371 SNQQIRLMRQETVKAIQSLEMAQRTQDTPAGLQF-----ENNAPFQYFQCLVAKYEQDLIAFRQQ 430
            .::  |.::...:|..::|.:.....|..:.::.     |:.:........:|..:....|...|
Yeast   703 PDR--RYLKHLVIKNNKNLNVINHNDDEASKVKLVTFTTESASKDDQASSSIAASKLTEKAHSPQ 765

  Fly   431 IALTERHMHAISNPQSISPDDLKRGFRQL----NESFISLAGRLHEVHQRVEEHKEHYL------ 485
            ..|.:.|..:..:|||.||:    |...:    ||...|....|  :...|...|.:|.      
Yeast   766 TDLKDDHDESTPDPQSKSPN----GSTSIPMIENEKISSKVPGL--LSNDVTFFKNNYYISPSIE 824

  Fly   486 ---NLRRYRLRDTTNV------------FERID--NPPLPTVEPQRISSGP 519
               |.....||...|:            .|.:|  |.||.|:....::.||
Yeast   825 TLGNKSLIELRKINNLVIGHRNYGKVEFLEPVDLLNTPLDTLCGDLVTFGP 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 47/177 (27%)
Nucleoporin_FG2 136..>525 CDD:374260 89/443 (20%)
NUP100NP_012855.1 Nucleoporin_FG2 54..>246 CDD:406391
ser_rich_anae_1 <290..>566 CDD:411418 63/242 (26%)
Nucleoporin_FG 429..509 CDD:404514 26/105 (25%)
Nucleoporin2 814..955 CDD:397975 14/62 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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