DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and ncoa5

DIOPT Version :10

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:XP_005166217.1 Gene:ncoa5 / 447849 ZFINID:ZDB-GENE-040912-155 Length:622 Species:Danio rerio


Alignment Length:224 Identity:54/224 - (24%)
Similarity:87/224 - (38%) Gaps:55/224 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPA------------ 136
            :|:.|.|...:|...|:    ..|.|..|| |.|.:.:.:...:...||:.||            
Zfish   422 STTDAGPHPSSATLEPS----QPTQAISAP-AQPTYSSLSLQTSHLTPASAPAQTNQQELQAKIL 481

  Fly   137 ----FGAPAATSAFGAPAATTAFGAPAS--TQASAFGAPA---PAVGTVAPTFSFATPATSAPTT 192
                .|:.::.::..||||.|. |.|.|  ||.::..|..   |.|.||.|..|.    :..||.
Zfish   482 SIFNSGSGSSVASSPAPAAQTQ-GYPPSLLTQTTSLQAAVSALPKVATVQPQSSI----SPRPTL 541

  Fly   193 APPAFGFGTTATTAAAAMPASLSSGIGSFSFPKPQATTAASLNFNTTTTTATAQPFNTGLKLGTT 257
            .||         .|..|.||..:         :|..|....:||:   ..:..:..:|.::.|..
Zfish   542 RPP---------VARMAAPAGAA---------RPTVTAGTGINFD---NPSVQKALDTLIQSGPI 585

  Fly   258 NATTTLG--GGGIFS-KPAGQAAAPAAST 283
            |....:|  |.|:.| :...|:..|::.:
Zfish   586 NQLVNIGSVGQGLRSAQGMAQSVDPSSQS 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 35/131 (27%)
Nucleoporin_FG2 136..>525 CDD:435043 40/172 (23%)
ncoa5XP_005166217.1 RRM_hnRNPC_like 27..94 CDD:409778
PLN03209 <424..587 CDD:178748 46/193 (24%)
Blue background indicates that the domain is not in the aligned region.

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