Protein Alignment Nup58 and Nup62

DIOPT Version :9

• Sequence 1: NP_650821.2
• Gene: Nup58 / 42342
• FlyBaseID: FBgn0038722
• Length: 546
• Species: Drosophila melanogaster
• Sequence 2: NP_001286489.1
• Gene: Nup62 / 36830
• FlyBaseID: FBgn0034118
• Length: 394
• Species: Drosophila melanogaster
• Alignment Length: 417
• Identity: 111/417 - (26%)
• Similarity: 159/417 - (38%)
• Gaps: 123/417 - (29%)

  Fly    26 PATTTAPPPSFGAATSTPTFGAAPATTSLFAAPAATPAFGAPAATPA------FGAPASTPGFG- 83
            |.||.||.   |.|||:.:||.:..|      |||.||.||....||      ||.||.|.|.|
  Fly     6 PTTTAAPT---GGATSSFSFGLSTGT------PAAAPASGAATTAPATKTTFSFGTPAPTAGIGG 61

  Fly    84 -----ATSTAAPAF------GTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPAF 137
                 :.:.|.|||      |||:|....|..||.:.....:|| |.|.:||.||||...|.||
  Fly    62 GDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPASTTSAT-ATGTSAAPPAFGGFTAQPA- 124

  Fly   138 GAPAATSAFGAPAATTAFGAPASTQASAFGAPAPAVGTVAPTFSFATPATSAPTTA-PPAFGFGT 201
                                                .:|.||.:.:.|.|:|.||. ....|.|.
  Fly   125 ------------------------------------ASVVPTIATSAPNTAATTTGLLGGSGLGA 153

  Fly   202 TATTAAA-----AMPASLSSGIGSFSFPKPQATT-AASLNFNTTTTTATAQPFNTGLKLGTTNAT 260
            ..|||||     |.|::::|..|  :.|.|..:| .|..|..|.|.|..:...:|..:|......
  Fly   154 PKTTAAASTTLTAAPSAIASTQG--AAPAPTLSTGGAFANLTTETKTTDSSAVSTASQLSYHQLE 216

  Fly   261 TTLG--------GGGIFSKPAGQAAAPAASTFVGLGGIDVTATQPKLGDNK------QDGIKIKE 311
            ..:.        ...:|::.|.|                :.|....|..|.      .|.:|..:
  Fly   217 EHINKWTLEFEEQEKVFTEQATQ----------------INAWDKLLISNNGKIVELNDAVKKVK 265

  Fly   312 T--QVPDEIIKTVDGLKAYIKQQKTISSDIGRTSTSKFTNVSHEITNL-KWALQNMAT--LVEGS 371
            |  ||.|:.::.:      ..|||.:...:|        .:..|..|| :..::...|  :||..
  Fly   266 TDQQVLDQELEFI------ATQQKELEDSLG--------PLEKEFVNLPRVDMERSQTYLMVENL 316

  Fly   372 NQQIRLMRQETVKAIQSLEMAQRTQDT 398
            :.|::.|.::..:.|.:|..|.:.|||
  Fly   317 DTQLKQMSEDLKEIIDNLNEANKGQDT 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Nup58	NP_650821.2	PHA03247	<25..195	CDD:223021	60/187 (32%)
		Nucleoporin_FG2	136..>525	CDD:374260	60/289 (21%)
Nup62	NP_001286489.1	Nsp1_C	194..300	CDD:309972	23/135 (17%)
		SMC_N	<213..392	CDD:330553	30/161 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R852
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.030