DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and fon

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_001163013.1 Gene:fon / 35211 FlyBaseID:FBgn0032773 Length:577 Species:Drosophila melanogaster


Alignment Length:515 Identity:101/515 - (19%)
Similarity:157/515 - (30%) Gaps:196/515 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NAIGGATAATGAFAFGARPATTTAPPPSFGAATSTPTFGAAPATT--SLFAAPAATPAFGAPAAT 70
            :::|...:|.||.|.|...|..|     .|.:..|.|.||...::  |.||:     .||...|.
  Fly    83 DSVGATESAEGASAGGLGGAVET-----LGGSAGTNTIGAGVGSSFGSNFAS-----GFGGQNAA 137

  Fly    71 PAFGAPASTPGFGATSTA------APAFGTAAATPAFGIPAATSAFGAPAATPA----------- 118
             :||| .:..||||.:.|      |.:||::.::.|....::.|.||:.||...           
  Fly   138 -SFGA-QNAAGFGAQNAASFGAQNAASFGSSFSSNAAFQTSSASNFGSTAAHQVGSNVEFADNAN 200

  Fly   119 ------FGAAAA------------------------------TP---AFGAPAATPAF------- 137
                  ||...|                              ||   .:..|..:..:       
  Fly   201 AGNKVDFGGVNAVDSSAQLLSGVQTVQSVPTSEYYRHEKIVSTPQQVVYTIPGGSQRYVHHEERI 265

  Fly   138 ---------GAPAATSAFGAPAATTAFGAP-------------ASTQASAFGAPAPAVGTVAPTF 180
                     ..|..|:.:.....||...||             .|..||.||:.|.:        
  Fly   266 VEQPTQVTQTVPVQTAHYYQRKVTTTASAPQLVQPVASSRLTYGSNAASTFGSNAAS-------- 322

  Fly   181 SFATPATSAPTTAPPAFGFGTTATT---AAAAMPASLSSGIGSFSFPKPQ--------------- 227
            :|.:.|         |..||:.|.|   :.||..:...|..|.......|               
  Fly   323 NFGSNA---------ATNFGSNAATNFGSNAAFNSQFGSSYGQNFQQNSQLSQLLSQTQQAARQQ 378

  Fly   228 -ATTAASLN---------------FNTTTTTATAQPFNTGLKLGTTNATTTLGGGGIFSKPAGQA 276
             |..|||.|               ||:...:|    ||:|.:.|..:|::......:.|...|.:
  Fly   379 AALQAASANQVQAGSGYAAGSQGGFNSGYNSA----FNSGSQFGFNSASSLNSASSLNSASTGNS 439

  Fly   277 AAPAASTFVG----------LGGIDVTATQPKLGDNKQDGIKIKETQVPDEIIKTVDGLKAYIKQ 331
            ||..:.:.:|          :||.....:...|...:..|:                ||.|....
  Fly   440 AALLSGSLLGGSQGSLLSGQVGGQQSLLSGSLLSGQQNLGL----------------GLNAAQTG 488

  Fly   332 QKTISSDIGRTSTSKFTNVSHEITNLKWALQ----------------NMATLVEGSNQQI 375
            |...:|.:|...::...|:.......:|..|                |...||.|.::.:
  Fly   489 QVVGASSVGAGLSAGAGNLGSGYRTKQWEKQSKWSSQNSYDSNGHVNNYKDLVTGESESV 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 50/256 (20%)
Nucleoporin_FG2 136..>525 CDD:374260 59/329 (18%)
fonNP_001163013.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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