Sequence 1: | NP_650821.2 | Gene: | Nup58 / 42342 | FlyBaseID: | FBgn0038722 | Length: | 546 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001075137.1 | Gene: | Nup62cl / 279706 | MGIID: | 2685565 | Length: | 272 | Species: | Mus musculus |
Alignment Length: | 315 | Identity: | 60/315 - (19%) |
---|---|---|---|
Similarity: | 108/315 - (34%) | Gaps: | 112/315 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 223 FPK----PQATTAASLNFNTTTTTATAQPFNTGLKLGTTNATTTLGGG-GIFSKPAGQAAAPAAS 282
Fly 283 TFVGLGGIDVTATQPKLGDNKQDGIKIKETQVPDEIIKTV------------------DGLKAYI 329
Fly 330 KQQKTISSDIGRTSTSKFTNVSHEITNLKWALQNMATLVEGSNQ--------------QIRLMRQ 380
Fly 381 ETVKAIQSLEMAQ---------RTQDTPAGLQFENNAPFQYFQCLVAKYEQDLIAFRQQIALTER 436
Fly 437 HMHAISNPQSISPDDLKRGFRQLNESFISL------AG----RLHEVHQRVEEHK 481 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nup58 | NP_650821.2 | PHA03247 | <25..195 | CDD:223021 | |
Nucleoporin_FG2 | 136..>525 | CDD:374260 | 60/315 (19%) | ||
Nup62cl | NP_001075137.1 | Nsp1_C | 65..179 | CDD:368271 | 22/152 (14%) |
SMC_prok_B | <105..>266 | CDD:274008 | 30/183 (16%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R852 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.030 |