DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and Nup98

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_001274093.1 Gene:Nup98 / 269966 MGIID:109404 Length:1816 Species:Mus musculus


Alignment Length:450 Identity:116/450 - (25%)
Similarity:150/450 - (33%) Gaps:158/450 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TPTTNNAIGGATAATGAF---AFG-------------------------ARPATTTAPPPSFGAA 39
            |.|.....|..|.:.|||   |||                         ::|||:|:....||.:
Mouse    20 TSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTS 84

  Fly    40 TSTPT--FGAAPATTSLFAAPAATPAFGAPAATPAFGAPASTPG-FGATSTAAPAFGTAAATPAF 101
            |.|..  ||.|...||||::.....|...|.....||...|:.| ||.|:|.:..||:.:.: .|
Mouse    85 TGTSNSLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPFGSTSGS-LF 148

  Fly   102 GIPAATSA-------FGAPAATPAF---------------------------------------- 119
            |..:.|:|       |..|..|...                                        
Mouse   149 GPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 213

  Fly   120 ------GAAAATPAFG-APA---ATPAFGAPAATSAFGAPAATTAFGAPASTQASAFGA-PAPAV 173
                  |.......|| :||   ||..|.:....|||......||||    |..:.||. |....
Mouse   214 GPQNQVGGGTTAGLFGSSPATSSATGLFSSSTTNSAFSYGQNKTAFG----TSTTGFGTNPGGLF 274

  Fly   174 G--TVAPTFSFATPATSAPTTAPPAFGFGTTATTAAAAMPASLSSGIGSFSFPKPQATTAASLNF 236
            |  ....|..|:.|...|.||....|.||.|:|   ...|::.:.|:    |...||:....| |
Mouse   275 GQQNQQTTSLFSKPFGQATTTPNTGFSFGNTST---LGQPSTNTMGL----FGVTQASQPGGL-F 331

  Fly   237 NTTTTTATAQPFNTGLKL-----------GTT----NATTTLG------------GGGIF-SKP- 272
            .|.|.|:|...|.||..|           |:|    |..||.|            .||:| :|| 
Mouse   332 GTATNTSTGTAFGTGTGLFGQPNTGFGAVGSTLFGNNKLTTFGTSTTSAPSFGTTSGGLFGNKPT 396

  Fly   273 ------------------AGQA---AAPAASTF-VGLG---GIDVTATQPKLGDNKQDGI 307
                              :|.:   :.|||.|. .|||   |..:.|.|..|..|.|..|
Mouse   397 LTLGTNTNTSNFGFGTNNSGSSIFGSKPAAGTLGTGLGTGFGTALGAGQASLFGNNQPKI 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 60/232 (26%)
Nucleoporin_FG2 136..>525 CDD:374260 64/228 (28%)
Nup98NP_001274093.1 FG repeats 1 1..156 40/136 (29%)
Nucleoporin_FG 40..149 CDD:372653 30/109 (28%)
GLEBS, interaction with RAE1. /evidence=ECO:0000250 157..213 3/55 (5%)
FG repeats 2 214..480 71/254 (28%)
Nucleoporin_FG 239..332 CDD:372653 30/104 (29%)
Nucleoporin_FG 329..466 CDD:372653 35/128 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 512..535
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 663..682
Nucleoporin2 740..880 CDD:367810
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 886..937
Nup96 1333..1622 CDD:371903
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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