DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and clec-122

DIOPT Version :10

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_494447.1 Gene:clec-122 / 189536 WormBaseID:WBGene00021290 Length:605 Species:Caenorhabditis elegans


Alignment Length:449 Identity:141/449 - (31%)
Similarity:193/449 - (42%) Gaps:102/449 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TTNNAIGGATAATGAFAFGARPATTTAPPPSFGAATSTPTFGAAPATTSLFAAPAATPAFGAPAA 69
            |.:.|.||:||.|.|   |...|||.|     |.:|::...|.:.|||:...:.|:|.|.|:.|:
 Worm    97 TASTAAGGSTATTAA---GGSTATTAA-----GGSTASTAAGGSTATTAAGGSTASTAAGGSTAS 153

  Fly    70 TPAFGAPASTPGFGATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAAT 134
            |.|.|:.|||...|:|:|.| |.|:.|.|.|.|..|:|:|.|:.|.|.|.|:.|:|.|.|:.|:|
 Worm   154 TAAGGSTASTAAGGSTATTA-AGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTAST 217

  Fly   135 PAFGAPAATSAFGAPAATTAFGAPASTQASAFGAPAPAVGTVAPTFSFATPATSAP--TTAPPAF 197
            .|.|:.|.|:|.|:.|.|.|.|:.|||.|....|...|.|:.|.|.:..:.||:|.  :||..|.
 Worm   218 AAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAA 282

  Fly   198 GFGTTATTAAAAMPASLSSGIGSFSFPKPQATTAASLNFNTTTTTATAQPFNTGLKLGTTNATTT 262
            | |:||||||....||.::| ||      .|:|||.   .:|.|||.          |.:.|||.
 Worm   283 G-GSTATTAAGGSTASTAAG-GS------TASTAAG---GSTATTAA----------GGSTATTA 326

  Fly   263 LGGGGIFSKPAGQAAAPAASTFVGLGGIDVTATQPKLGDNKQDGIKIKETQVPDE---------- 317
            .||....:...|..|:.||      ||  .|||....|.....|:.:..:..|..          
 Worm   327 AGGSTASTAAGGSTASTAA------GG--STATTAAGGSTASTGVTVASSPAPAAACEPGYKRFN 383

  Fly   318 ------IIKTVDGLKA--------------------------YIKQQKTISSDIGRTSTSKFTNV 350
                  .||...|..|                          ||  |.::.|.|.:.|.|.:..:
 Worm   384 RPSGPWCIKVFTGYFAAQIDAERACQAAGGALTGLQNQDEALYI--QSSLLSQIKQPSASVWIGI 446

  Fly   351 SHEITNLKWALQNMATLVEGSNQQIRLMRQETVKAIQSLEMAQRTQDTPAGLQFENNAP 409
            ..:           |:.| |..|      ..|....||.|....:.|...|:.|:...|
 Worm   447 KRK-----------ASCV-GKPQ------DATCTRTQSFEWTDDSADGVNGMVFQKGQP 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 69/171 (40%)
Nucleoporin_FG2 136..>525 CDD:435043 87/318 (27%)
clec-122NP_494447.1 FhaB <17..>365 CDD:442443 117/305 (38%)
CLECT 375..505 CDD:214480 23/133 (17%)
CLECT 550..>599 CDD:214480
Blue background indicates that the domain is not in the aligned region.

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