DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and plg-1

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_001364773.1 Gene:plg-1 / 13190610 WormBaseID:WBGene00004041 Length:116 Species:Caenorhabditis elegans


Alignment Length:24 Identity:11/24 - (45%)
Similarity:14/24 - (58%) Gaps:0/24 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 PFNTGLKLGTTNATTTLGGGGIFS 270
            |...|:.||..|:|||:.|...||
 Worm    65 PTPPGVDLGCHNSTTTMSGLTRFS 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021
Nucleoporin_FG2 136..>525 CDD:374260 11/24 (46%)
plg-1NP_001364773.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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