DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup58 and nup98

DIOPT Version :9

Sequence 1:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_001265682.1 Gene:nup98 / 100145055 XenbaseID:XB-GENE-6450416 Length:1790 Species:Xenopus tropicalis


Alignment Length:714 Identity:178/714 - (24%)
Similarity:233/714 - (32%) Gaps:246/714 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFTPTTNNAIG---GATAATGAF----AFGARPATT--------------------TAPPPSFGA 38
            ||..|..:..|   ||..||..|    .||..|||.                    |.|...||:
 Frog     1 MFNKTFGSPFGTGNGAFGATSTFGQTTGFGTTPATAFGSAGFGTNTSTGGLFGNTQTKPGGLFGS 65

  Fly    39 ------ATSTPT----FGAAPATT-SLFAA--------PAATPAFG--APAATPAFGAPASTPG- 81
                  |||:.:    |||:..|| |||.:        ...:.|||  .|.....||...||.| 
 Frog    66 TTFNQPATSSSSSGFGFGASTGTTNSLFGSTNTGSGLFATQSNAFGQAKPTTFGNFGTSTSTGGL 130

  Fly    82 FGATSTAAPAFGTAAA--------------TPAFGIPAATSAF---------------------- 110
            ||.|:||.|..||:|:              |..|..|:.|...                      
 Frog   131 FGNTNTANPFGGTSASLFGASTFSAAPTGTTIKFNPPSGTDTMAKGGVTTNISTKHQCITAMKEY 195

  Fly   111 ------------------------GAPAATPAFGAAAATPAFGAPAATPAFGAPAATSAFGAPAA 151
                                    |||..|..||.:|||    :.|:|..||:.||.::|.....
 Frog   196 ESKSLEELRLEDYQANRKGPQNPVGAPTGTGLFGTSAAT----SSASTGIFGSTAANNSFSFAGN 256

  Fly   152 TTAFGAPASTQA------SAFGAPA--PAVGTVAPTFSFATPATSAPTTAPPAFGFGTTATTAAA 208
            .|.||. |.|.|      ..||.||  ||...      |..|..:|.||....|.||.|:|   .
 Frog   257 KTTFGT-AGTGAFGGNTGGLFGQPANQPAASL------FNKPFGNATTTQSTGFSFGNTST---L 311

  Fly   209 AMPASLSSGIGSFSFPKPQATTAASLNFNTTTTTATAQPFNTGLKL-GTTNATTTLGGGGIF-SK 271
            ..|.:.:.|:    |...|.|.:..| |.|||.|.....|..|..| |..|......|..:| :|
 Frog   312 GQPQTSTMGL----FGANQPTQSGGL-FGTTTNTNATGAFGAGTSLFGQPNPAPFGTGSTLFGNK 371

  Fly   272 PAG----QAAAPA-ASTFVGLGGIDVTATQPKLGDNKQD-----GIKIKETQVPDEIIKTVDGLK 326
            |||    ..:||| .:|..||.|...|.|   ||.|...     |.....|.:...  ||..|  
 Frog   372 PAGFGTTTTSAPAFGTTTGGLFGNKPTLT---LGTNTNTSNFGFGSNTAGTSLFGN--KTATG-- 429

  Fly   327 AYIKQQKTISSDIGRTSTSKFTNVSHEITNLKWALQNMATLVEGSNQQIRLMRQETVKAIQSLEM 391
                   ||...:|              |....||....|.:.||||. :|.......|..:...
 Frog   430 -------TIGPSLG--------------TGFGTALNPGQTSLFGSNQP-KLTGTLGTGAFGNAGF 472

  Fly   392 AQRTQDTPAGLQFENNAP------------------FQYFQCLVAKYE--QDLIAFR-------- 428
                ..|.|||.|  .||                  |...|....:|.  .|...||        
 Frog   473 ----NSTSAGLGF--GAPQAPVAALSDPGASAAHQMFLQQQYNALRYSPFPDSPLFRNPISDPKK 531

  Fly   429 ------------QQIALTERHMHAISNPQS-ISPDDLKRGFRQLNESFISLAGRLHEVHQRVEEH 480
                        |:..||..|......|.: :.|..|:......::.|.:|......:...|...
 Frog   532 KEELLKPTNPAAQKAVLTPTHYKLTPRPAARVRPKALQNSGAAKSQLFDALDDDEPVLSSGVFMP 596

  Fly   481 KEHYLNLRRYRLRDTTNVFER----IDN--PPLPTVEPQR---------------ISSGPTPFS 523
            |:....|....|::::::|.:    :|:  ||.|.. |:|               .::.|:|||
 Frog   597 KKSIKKLDLKYLKNSSSLFGQENRDVDDMVPPTPEA-PERSVENHHGDEENDEEAATTYPSPFS 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 73/279 (26%)
Nucleoporin_FG2 136..>525 CDD:374260 116/470 (25%)
nup98NP_001265682.1 Nucleoporin_FG 27..149 CDD:290362 38/121 (31%)
Nucleoporin_FG <216..323 CDD:290362 40/124 (32%)
Nucleoporin_FG 272..394 CDD:290362 44/135 (33%)
Nucleoporin_FG 355..468 CDD:290362 37/141 (26%)
Nucleoporin2 727..866 CDD:282016
Nup96 1307..1600 CDD:288926
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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