DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dys and actn4

DIOPT Version :9

Sequence 1:NP_001036722.1 Gene:Dys / 42327 FlyBaseID:FBgn0260003 Length:3598 Species:Drosophila melanogaster
Sequence 2:XP_017951705.1 Gene:actn4 / 448522 XenbaseID:XB-GENE-494339 Length:926 Species:Xenopus tropicalis


Alignment Length:1152 Identity:251/1152 - (21%)
Similarity:403/1152 - (34%) Gaps:415/1152 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILID---ERQHIQKKTFTKWINSHLIDTQCTPVKDLFLDLRDGHRLLALLSTLTQTNL-KPEKGR 65
            :|:|   |:|  |:||||.|.||||.... |.::::..|.|||.:|:.||..::...| |||:|:
 Frog    35 LLLDPAWEKQ--QRKTFTAWCNSHLRKAG-TQIENIDEDFRDGLKLMLLLEVISGERLPKPERGK 96

  Fly    66 MRVHHINNLNKVITEIQQHGVKLVNISSDDIVGGNAKLTLGLIWLIALEFNGQHLVKSHSSNGVE 130
            ||||.|||:||.:..|...|||||:|.:::||.||.|:|||:||.|.|.|..|.:  |......:
 Frog    97 MRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNTKMTLGMIWTIILRFAIQDI--SVEETSAK 159

  Fly   131 KSLLAWARQYTEPH-GLQLNDFSSSWSDGRAFLMILDAHVEELNLQAALQQHALKR------LHL 188
            :.||.|.::.|.|: .:.:.:|..||.||.||..::..|..||     ::...|::      |:.
 Frog   160 EGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL-----IEYDKLRKDDPVTNLNN 219

  Fly   189 AFDLAHRHFKIEKLLDAED-VHTHKPDNKSIQMYVMCLYHAMESMRTRQQEQEQDEGQDQDPGRV 252
            ||::|.|:..|.|:||||| |:|.:||.|:|..||...|||.                       
 Frog   220 AFEVAERYLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAF----------------------- 261

  Fly   253 PCTSITDLDEVPLDNDQTSLGLYTSDSAGSMEQRSSGELKTHSMRPLSTATNASVEISGYQSALE 317
                                               ||..|.      .||.|...::.......|
 Frog   262 -----------------------------------SGAQKA------ETAANRICKVLAVNQENE 285

  Fly   318 AVLTLLLEDEQLLSQNLPDPQDFQTAKLQFHENESFMLKLTEHQEYVGEALEEGSNLINESQKAG 382
            .    |:||.:.|:.:|                          .|::...:....|.:.|.....
 Frog   286 H----LMEDYEKLASDL--------------------------LEWIRRTIPWLENRVPEKTMHD 320

  Fly   383 AGLSQEDQNEVR--------QQMVLLNERWETLRLRALDVQAKILMRLAEFQKQKLEQLRQFLTS 439
            .....||..:.|        |:...|...:.||:                 .|.:|.....|:.|
 Frog   321 MQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQ-----------------TKLRLSNRPAFMPS 368

  Fly   440 VEDRISHMSDIGPTLEEAEK----QLLEAQKLKADLSEQQELVDSLSSMVVIVNDTSGNFNDLED 500
            ....:|.:::....||:|||    .||.|.:       :.|.:|.|:.               :.
 Frog   369 EGKMVSDINNGWQHLEQAEKGFEEWLLNAIR-------RLERLDHLAE---------------KF 411

  Fly   501 RLSAL-GERWSH----VVKWSDLRKEKLQQYKCISRWLDAREQDLKLMESRDVTDVGGITQRINE 560
            |..|| .|.|:.    ::|..|.....|...|.:.|..:|.|.||...:.| |..:..|.|.:||
 Frog   412 RQKALIHEAWTEGKEAMLKQKDYESATLADIKALIRKHEAFESDLAAHQDR-VEQIAAIAQELNE 475

  Fly   561 LNY---------CAK--DLLELQRYLIDLRQMVAATLQDGDDKGERVLIQLESYEDRLDALKQIV 614
            |:|         |.|  |..:|...|...|:..                 ||..|.:|:|:.|: 
 Frog   476 LDYYDSPSVNARCQKICDQWDLLGSLTHTRREA-----------------LEVTEKQLEAIDQL- 522

  Fly   615 EVQTVRIETKGFNFGRDRASYDDSRVVRPEGWVDYQMIIRFGEDDSQEDDDEHDLASKKRKLRNA 679
                                           :::|                          .:.|
 Frog   523 -------------------------------YLEY--------------------------AKRA 530

  Fly   680 DNFNALENHIMEHFGYVQEVEQKLQQLQRQSLRQQCELLKELQAENSRRCGTLPELKKLYEVCEL 744
            ..||             ..:|..::.||...:....|.::.|.|.:.:...|||:          
 Frog   531 APFN-------------NWMEGAMEDLQDMFIVHTIEEIEGLIAAHEQFKSTLPD---------- 572

  Fly   745 EDPSRNLLLEETHIKQLEQRYANLSQKLSSQQSESHTLLAKEKYYNSLTGFKLVLADSRDWYK-- 807
            .|..|..:|          ...|.:||::..   ||..||....|.::|.   .:.:|: |.|  
 Frog   573 ADREREAIL----------GIQNEAQKIADY---SHIKLASGNPYTTVTP---QIINSK-WEKVQ 620

  Fly   808 ----QHAGSASG-NELEQRLSHME----SLASEISEAKTATEELDDNLIEWKQDFGLFYDSWHDM 863
                :..|:..| ::.:|...|:.    |||:.:.              .|.|         ..|
 Frog   621 QLVPKRDGALKGEHDKQQSNEHLRLQFASLANVVG--------------PWIQ---------AKM 662

  Fly   864 KQALQALIQQRGGESLSRQLKQIQDFVTKVSNQKVRVSNLEVMQEQQHFLNQLLDEMESLRLTYD 928
            ::..:..|:..|  :|..|:..::.:...|.|.|..:..|    ||||   ||:.|    .|.:|
 Frog   663 EEIGRIAIELHG--TLEDQMTHLKQYEQSVINYKPNIDKL----EQQH---QLIQE----ALIFD 714

  Fly   929 NIPKHLIGEELQTAWNRLPEQLNERVIKQTTAIEN---------------------LNHF----- 967
            |...:...|.::..|    |.|...:.:.:..:||                     .|||     
 Frog   715 NKHTNYTMEHIRVGW----EHLLTTIARTSNEVENQILTRDAKGISQEQMHEYRASFNHFDRDHT 775

  Fly   968 ----AAEYNAIIAMLRSAADSKLNGSDGASSQDLRKLEIDVISARNFSEILIK------EAEPAQ 1022
                ..|:.|.:..|            |...::.|:..|..:.|.:|..:||.      :||   
 Frog   776 GALGPEEFKACLISL------------GYDVENDRQKRIGALDADDFRALLISTGYSLGDAE--- 825

  Fly  1023 KESLQSQIRALNTLYDQVEQVHREKKEQQTVLQSHIDLIQLRLKETD 1069
                          ::::..:...........|:.||.:.....:||
 Frog   826 --------------FNRIMAIVDPNNTGMVTFQAFIDFMSRETTDTD 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DysNP_001036722.1 CH 13..111 CDD:278723 49/98 (50%)
CH 129..225 CDD:278723 36/103 (35%)
SPEC 312..525 CDD:238103 40/229 (17%)
SbcC <325..957 CDD:223496 124/670 (19%)
Smc <816..1591 CDD:224117 52/294 (18%)
SPEC 1174..1365 CDD:238103
SPEC 1289..1485 CDD:295325
SPEC 2369..2576 CDD:238103
SPEC 2477..2714 CDD:238103
WW 2852..2882 CDD:238122
EF-hand_2 2883..2997 CDD:286194
EF-hand_3 3001..3100 CDD:286195
ZZ_dystrophin 3110..3158 CDD:239074
actn4XP_017951705.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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