DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dys and Actn

DIOPT Version :9

Sequence 1:NP_001036722.1 Gene:Dys / 42327 FlyBaseID:FBgn0260003 Length:3598 Species:Drosophila melanogaster
Sequence 2:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:1124 Identity:255/1124 - (22%)
Similarity:433/1124 - (38%) Gaps:347/1124 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LID---ERQHIQKKTFTKWINSHLIDTQCTPVKDLFLDLRDGHRLLALLSTLT-QTNLKPEKGRM 66
            |:|   |:|  ||||||.|.||||.... |.:.::..|.|:|.:|:.||..:: :|..||::|:|
  Fly    27 LLDPAWEKQ--QKKTFTAWCNSHLRKAG-TAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKM 88

  Fly    67 RVHHINNLNKVITEIQQHGVKLVNISSDDIVGGNAKLTLGLIWLIALEFNGQHLVKSHSSNGVEK 131
            |.|.|.|:||.:..|...||.||:|.:::||.||.|:|||:||.|.|.|..|.:  |......::
  Fly    89 RFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--SVEEMTAKE 151

  Fly   132 SLLAWARQYTEPH-GLQLNDFSSSWSDGRAFLMILDAHVEELNLQAAL-QQHALKRLHLAFDLAH 194
            .||.|.::.|.|: .:.:.:|..|:.||.||..::..|..:|...|.| :.:.|:.|:.|||:|.
  Fly   152 GLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAE 216

  Fly   195 RHFKIEKLLDAED-VHTHKPDNKSIQMYVMCLYHAMESMR-----------TRQQEQEQDEGQDQ 247
            ::..|.::||.:| ::|.|||.::|..||.|.|||.:..:           |||.....:....:
  Fly   217 KYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPNNYNAE 281

  Fly   248 DPGRVPCTSITDLDEVPLDNDQTSLGLYTSDSAGSME--QRSSGELKTHSMR--PLSTATNASVE 308
            ......|..:    :|..:|::.            ||  :|.:.:|.....|  |...:..|...
  Fly   282 TAANRICKVL----KVNQENERL------------MEEYERLASDLLEWIRRTMPWLNSRQADNS 330

  Fly   309 ISGYQSALEAVLTLLLEDEQLLSQNLPDPQDFQTAKLQFHENE-SFMLKLTEHQEYV---GEALE 369
            ::|.|..||...|...:.:        .|:..|.|||:.:.|. ...|:|:....|:   |:.:.
  Fly   331 LAGVQKKLEEYRTYRRKHK--------PPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVS 387

  Fly   370 EGSNLINESQKAGAGLSQEDQNEVRQQMVLLNERW---ETLRLRALDVQAKILMRLAEFQKQKLE 431
            :.||    |.| |..|:::           ..|.|   ||:||                  ::||
  Fly   388 DISN----SWK-GLELAEK-----------AFEEWLLAETMRL------------------ERLE 418

  Fly   432 QLRQFLTSVEDRISHMSDIGPTLEEAEKQLLEAQKLKADLSEQQELVDSLSSMVVIVNDTSGNFN 496
            .|.|       :..|.:|........::::|::|                               
  Fly   419 HLAQ-------KFKHKADAHEDWTRGKEEMLQSQ------------------------------- 445

  Fly   497 DLEDRLSALGERWSHVVKWSDLRKEKLQQYKCISRWLDAREQDLKLMESRDVTDVGGITQRINEL 561
                                |.|:.||.:.|.:.:..:|.|.||...:.| |..:..|.|.:|.|
  Fly   446 --------------------DFRQCKLNELKALKKKHEAFESDLAAHQDR-VEQIAAIAQELNTL 489

  Fly   562 NY--CAKDLLELQRYLIDLRQMVAATLQDGDDKGERVLIQLESYEDRLDALKQIVEVQTVRIETK 624
            .|  |..               |.|..|...|:.:|:....:.....||..::|:|    :|:..
  Fly   490 EYHDCVS---------------VNARCQRICDQWDRLGALTQRRRTALDEAERILE----KIDIL 535

  Fly   625 GFNFGRDRASYDDSRVVRPEGWVD------YQMIIRFGEDDSQEDDDEHDLASKKRKLRNAD-NF 682
            ...|.:..|.:::        |:|      ..|.|....::.|.....||  ..|..|..|| .|
  Fly   536 HLEFAKRAAPFNN--------WLDGTREDLVDMFIVHTMEEIQGLIQAHD--QFKATLGEADKEF 590

  Fly   683 NALENHIMEHFGYVQEVEQKLQQLQRQSLRQQCELLKELQAENSRRCGTLP-ELKKLYEVCELED 746
            |.:.|       .|:|||..::|.|                        :| .|:..|......|
  Fly   591 NLIVN-------LVREVESIVKQHQ------------------------IPGGLENPYTTLTAND 624

  Fly   747 PSRNLLLEETHIKQL-EQRYANLSQKLSSQQSESHTLLAKEKYYNSLTGFKLVLADSRDWYKQHA 810
            .:|    :.:.::|| .||...|:.:|..||:            |.:.            .:|.|
  Fly   625 MTR----KWSDVRQLVPQRDQTLANELRKQQN------------NEML------------RRQFA 661

  Fly   811 GSAS--GNELEQRLSHMESLASEISEAKTATEELDDNLIEWKQDFGLFYDSWHDMKQALQALIQQ 873
            ..|:  |..:|:::           :|.||                        :...||.    
  Fly   662 EKANIVGPWIERQM-----------DAVTA------------------------IGMGLQG---- 687

  Fly   874 RGGESLSRQLKQIQDFVTKVSNQKVRVSNLE----VMQEQQHFLNQLLD-EMESLRLTYDNIPKH 933
                ||..||.:::::...|...|..:..||    .:||...|.|:..: .||:||:.:      
  Fly   688 ----SLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRVGW------ 742

  Fly   934 LIGEELQTAWNR-LPEQLNERVIKQTTAI--ENLNHFAAEYN-----------------AIIAML 978
               |:|.|:.|| :.|..|:.:.:.:..|  |.||.|.:.:|                 .::::.
  Fly   743 ---EQLLTSINRNINEVENQILTRDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKSCLVSLG 804

  Fly   979 RSAADSKLNGSDGASSQDLRKLEIDVISARN--------FSEILIKEA---EPAQKESLQSQIRA 1032
            .|.      |.|.....|.::: :.|:...|        |.:.:.:|:   :.|::.....:|.|
  Fly   805 YSI------GKDRQGDLDFQRI-LAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILA 862

  Fly  1033 LNTLYDQVEQVHREKKEQQ 1051
            .:..|...:::.||....|
  Fly   863 ADKPYILPDELRRELPPDQ 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DysNP_001036722.1 CH 13..111 CDD:278723 45/98 (46%)
CH 129..225 CDD:278723 32/98 (33%)
SPEC 312..525 CDD:238103 38/219 (17%)
SbcC <325..957 CDD:223496 126/657 (19%)
Smc <816..1591 CDD:224117 50/272 (18%)
SPEC 1174..1365 CDD:238103
SPEC 1289..1485 CDD:295325
SPEC 2369..2576 CDD:238103
SPEC 2477..2714 CDD:238103
WW 2852..2882 CDD:238122
EF-hand_2 2883..2997 CDD:286194
EF-hand_3 3001..3100 CDD:286195
ZZ_dystrophin 3110..3158 CDD:239074
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 48/106 (45%)
CH_ACTN_rpt2 139..252 CDD:409065 37/114 (32%)
SPEC 302..525 CDD:238103 65/338 (19%)
SPEC 420..647 CDD:238103 65/349 (19%)
SPEC 538..760 CDD:238103 69/342 (20%)
EFh 775..842 CDD:238008 9/73 (12%)
EFhand_Ca_insen 847..913 CDD:400872 7/35 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439908
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11915
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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