DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5316 and aptx

DIOPT Version :9

Sequence 1:NP_650805.1 Gene:CG5316 / 42322 FlyBaseID:FBgn0038704 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_999894.1 Gene:aptx / 405797 ZFINID:ZDB-GENE-040628-2 Length:324 Species:Danio rerio


Alignment Length:176 Identity:71/176 - (40%)
Similarity:96/176 - (54%) Gaps:3/176 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WSSALIKDISKPENLIISSEIAVVIADKFPKAQHHYLVLPLADIPSIFHLNRSHLSLLEELHLLA 67
            ||..|...:..|:..:...:..|||.||:|||::|:||||...|.|:..|...|:.||:.:..:|
Zfish   149 WSQGLKASMQDPKMQVYKDDSVVVIKDKYPKARYHWLVLPWQSISSLKALRSEHVELLKHMQRVA 213

  Fly    68 RNVVE-VKGVRWQDFNVGFHAEPSMQRLHLHVISKDFVSTSLKTKKHWNSFNTELFVPYTKLYAQ 131
            ..:|| ........|.:|:||.|||..:||||||:||.|..||.|||||||.|:.||....:.:.
Zfish   214 DQMVEQCPDAHKLSFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFVESQDVISM 278

  Fly   132 LEKENSISRLPKSLKDELLAKPLICNQCEFVARNLPSLKGHLVGHL 177
            ||.:..:.  .|....|||..||.|:.|......:|.||.||..||
Zfish   279 LEHDGKVQ--VKEGAGELLKLPLRCHVCGKEQTTIPKLKDHLKTHL 322

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG5316NP_650805.1 DcpS_C 8..100 CDD:288796 34/92 (37%)
zf-C2HE 119..179 CDD:292895 20/59 (34%)
DcpS_C 235..326 CDD:288796
zf-C2HE 345..405 CDD:292895
aptxNP_999894.1 FHA 5..98 CDD:238017
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..160 3/10 (30%)
aprataxin_related 147..247 CDD:238609 37/97 (38%)
Interaction with DNA substrate. /evidence=ECO:0000250|UniProtKB:Q7Z2E3 175..179 2/3 (67%)