DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5316 and aptx

DIOPT Version :9

Sequence 1:NP_650805.1 Gene:CG5316 / 42322 FlyBaseID:FBgn0038704 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_991394.1 Gene:aptx / 403092 XenbaseID:XB-GENE-1015068 Length:347 Species:Xenopus tropicalis


Alignment Length:178 Identity:67/178 - (37%)
Similarity:98/178 - (55%) Gaps:9/178 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WSSALIKDISKPENLIISSEIAVVIADKFPKAQHHYLVLPLADIPSIFHLNRSHLSLLEELHLLA 67
            ||..|...:..|...:...:..|||.||:|||::|:||||...|.::..|...||.|::.:|.:.
 Frog   172 WSQGLKASMQDPTMQVFKDDKVVVIKDKYPKARYHWLVLPWQSIANLKVLRAEHLELVQHMHAVG 236

  Fly    68 RNVV-EVKGVRWQDFNVGFHAEPSMQRLHLHVISKDFVSTSLKTKKHWNSFNTELFVPYTKLYAQ 131
            :.:. |....:...|.:|:||.|||..:||||||:||.|..||.|||||||.|:.|:....:...
 Frog   237 QKIAKEHSDSKCAPFQLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFLESQAMIEM 301

  Fly   132 LEKENSISRLPKSLKD---ELLAKPLICNQCEFVARNLPSLKGHLVGH 176
            ::....:     ::||   |||..||:|:.|.....|:|.||.||..|
 Frog   302 IKTHGKV-----NVKDGVSELLKTPLMCHICRKEQANMPQLKEHLKKH 344

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG5316NP_650805.1 DcpS_C 8..100 CDD:288796 32/92 (35%)
zf-C2HE 119..179 CDD:292895 18/61 (30%)
DcpS_C 235..326 CDD:288796
zf-C2HE 345..405 CDD:292895
aptxNP_991394.1 FHA_2 4..99 CDD:375424
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..176 2/3 (67%)
aprataxin_related 169..270 CDD:238609 35/97 (36%)
Interaction with DNA substrate. /evidence=ECO:0000250|UniProtKB:Q7Z2E3 198..202 2/3 (67%)