DRSC/TRiP Functional Genomics Resources

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Protein Alignment Aptx and Aptx

DIOPT Version :10

Sequence 1:NP_650805.1 Gene:Aptx / 42322 FlyBaseID:FBgn0038704 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_017448660.1 Gene:Aptx / 259271 RGDID:628740 Length:343 Species:Rattus norvegicus


Alignment Length:178 Identity:72/178 - (40%)
Similarity:104/178 - (58%) Gaps:9/178 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WSSALIKDISKPENLIISSEIAVVIADKFPKAQHHYLVLPLADIPSIFHLNRSHLSLLEELHLLA 67
            ||..|...:..|:..:...:..|||.||:|||:||:||||.|.|.|:..:...||.||:.:|.:.
  Rat   168 WSQGLKISMKDPKMQVYKDDQVVVIKDKYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVG 232

  Fly    68 RNVV-EVKGVRWQDFNVGFHAEPSMQRLHLHVISKDFVSTSLKTKKHWNSFNTELFVPYTKLYAQ 131
            ..|: :..|.....|.:|:||.|||..:||||||:||.|..||.||||||||||.|:....:...
  Rat   233 EKVIADFTGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKM 297

  Fly   132 LEKENSISRLPKSLKD---ELLAKPLICNQCEFVARNLPSLKGHLVGH 176
            :::...:     ::||   |||..||.|::|:.:..::|.||.||..|
  Rat   298 VQEAGRV-----TVKDGTCELLKLPLRCHECQQLLPSIPQLKEHLRKH 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AptxNP_650805.1 DcpS_C 8..113 CDD:463415 44/105 (42%)
zf-C2HE 118..179 CDD:465082 19/62 (31%)
DcpS_C 235..339 CDD:463415
zf-C2HE 344..406 CDD:465082
KLF1_2_4_N <511..585 CDD:425360
AptxXP_017448660.1 FHA 16..115 CDD:469597
aprataxin_related 165..266 CDD:238609 40/98 (41%)
zf-C2HE 284..341 CDD:465082 17/59 (29%)
Blue background indicates that the domain is not in the aligned region.

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