DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Delta and Dner

DIOPT Version :10

Sequence 1:NP_477264.1 Gene:Delta / 42313 FlyBaseID:FBgn0000463 Length:833 Species:Drosophila melanogaster
Sequence 2:NP_001386260.1 Gene:Dner / 316573 RGDID:1359385 Length:746 Species:Rattus norvegicus


Alignment Length:577 Identity:165/577 - (28%)
Similarity:252/577 - (43%) Gaps:103/577 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SW-PGTFSLIVE-AWHDTN-----NSGNARTNKLLIQRLLVQQVLEVSSE-------------WK 165
            :| |.|...:|| .|....     ..|||.:|.....||:..:|.:.:|.             ||
  Rat   186 TWQPKTGQKVVEMKWDQVEVVPDVACGNASSNNSAGGRLVSFEVPQNTSVKIRQDATALLILLWK 250

  Fly   166 TNKSESQYTSLEYDFRVTCDLNYYGS----------GCAKFCRPRDDSFGHSTCSETGEIICLTG 220
            ...:..|..|| .|.|....|...|.          |...|....:||...|..:....::....
  Rat   251 VTATGFQQCSL-IDGRSVTPLQAPGGLVLLEEMLTLGPNHFIGFVNDSVAKSIVALRLTLVVKAS 314

  Fly   221 WQGDYCHIPKCAKGCEHGHCDKPNQCVCQLGWKGALCNECVLEPNCIHGTCNKPWTCICNEGWGG 285
                     .|..|..|.     |...|  ..||    :|..:|:      ...::|.|.:.:.|
  Rat   315 ---------TCVPGDGHS-----NDIEC--SGKG----KCATKPS------EATFSCTCEDQYIG 353

  Fly   286 LYCNQDLNYCTNHRPCKNGGTCFNTGE----GLYTCKCAPGYSGDDCENEIYSCDADVNPCQNGG 346
            .:| ::.:.| ..:||:|..:|.:..|    ..:||.|.|||:|:.|:::|..|..|  ||:||.
  Rat   354 TFC-EEFDAC-QRKPCQNEASCIDANEKQDGSNFTCLCLPGYTGELCQSKIDYCVLD--PCRNGA 414

  Fly   347 TCIDEPHTKTGYKCHCANGWSGKMCEEKVLTCSDKPC-HQGICRNVRPGLGSKGQGYQCECPIGY 410
            ||:.   :.:|:.|.|..|:.|..|||||..|...|| :.|.|.       ..|..:.|.|..|:
  Rat   415 TCVS---SLSGFTCQCLEGYFGSACEEKVDPCMSSPCQNNGTCY-------VDGVHFTCSCSPGF 469

  Fly   411 SGPNCDLQLDNCSPNPCINGGSCQPSG---KCICPAGFSGTRCETNIDDCLGHQCENGGTCIDMV 472
            :||.|...:|.|:.:||.: |.|:..|   ||:|..|:.|..||...::||...|.|..||.|:|
  Rat   470 TGPTCAQLVDFCALSPCAH-GMCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLV 533

  Fly   473 NQYRCQCVPGFHGTHCSSKVDLCLIRPCANGGTCLNLNNDYQCTCRAGFTGKDCSVDIDECSSGP 537
            |.|.|.|:..:.||||....|.|....|.|||||.:...:..|.|..||||::|.:||:||.|.|
  Rat   534 NGYECVCLAEYKGTHCELYKDPCANISCLNGGTCDSEGLNGTCICAPGFTGEECDIDINECDSNP 598

  Fly   538 CHNGGTCMNRVNSFECVCANGFRGKQCD-EESYDSVTFDAHQYGATTQARADGLTN----AQVVL 597
            ||:.|||:::.|.:.|.|.:|:.|..|: ...:.|    .|.        |:.|||    :..::
  Rat   599 CHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKS----GHM--------AESLTNMPRHSLYII 651

  Fly   598 IAVFSVA---MPLVAVIAACVVFCMK---RKRKRAQEKDDAEARKQNEQNAVATMHH 648
            |....||   |.::.::..|.:..::   ..|...:|..:..:......||:|::.|
  Rat   652 IGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRH 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DeltaNP_477264.1 MNNL 23..182 CDD:462222 20/80 (25%)
DSL 164..226 CDD:128366 14/71 (20%)
EGF_CA 291..329 CDD:238011 13/41 (32%)
EGF_CA 337..372 CDD:238011 12/34 (35%)
EGF_CA 453..488 CDD:238011 14/34 (41%)
EGF_CA 492..526 CDD:238011 14/33 (42%)
EGF_CA 529..564 CDD:238011 16/34 (47%)
DnerNP_001386260.1 EGF_CA 402..437 CDD:238011 14/39 (36%)
EGF_CA 440..474 CDD:238011 12/40 (30%)
EGF_CA 516..550 CDD:238011 15/33 (45%)
EGF_CA 590..626 CDD:238011 16/35 (46%)
DNER_C 644..746 CDD:437162 11/65 (17%)

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