DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dl and dll4

DIOPT Version :9

Sequence 1:NP_001247193.1 Gene:Dl / 42313 FlyBaseID:FBgn0000463 Length:833 Species:Drosophila melanogaster
Sequence 2:XP_002939596.3 Gene:dll4 / 100489166 XenbaseID:XB-GENE-480902 Length:673 Species:Xenopus tropicalis


Alignment Length:575 Identity:245/575 - (42%)
Similarity:330/575 - (57%) Gaps:70/575 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VIVQVHSSGSFELRLKYFSNDHGRDNEGRCCSGESDGATGKCLGSCKTRFRVCLKHYQATIDTTS 80
            ::.||.|||.|:|.|..|.|.:|....|:           .||.:|:|.|::|||||| |:.:..
 Frog    17 LVKQVSSSGVFQLELHEFINTNGMLVNGK-----------SCLPNCRTFFKICLKHYQ-TVVSPG 69

  Fly    81 QCTYGDVITPILGENSVNLTDAQRFQNKGFTNPIQFPFSFSWPGTFSLIVEAWHDTNNSGNARTN 145
            .||:|.||||:||.|:.::...:     ||||||:.||:|:||.|||||:||:|...:...   .
 Frog    70 SCTFGSVITPVLGSNTFSIKGME-----GFTNPIKLPFNFTWPKTFSLIIEAFHSPTDLSQ---Q 126

  Fly   146 KLLIQRLLVQQVLEVSSEWKTN-KSESQYTSLEYDFRVTCDLNYYGSGCAKFCRPRDDSFGHSTC 209
            ::.|.:..:|:.|.|..||..: :|......|::.:||.|..||||..|::.|:||||.|||..|
 Frog   127 EIKISQFTIQKPLNVGEEWSRDIQSGGSQIQLKFSYRVVCSENYYGESCSRLCKPRDDRFGHYLC 191

  Fly   210 SETGEIICLTGWQGDYCHIPKCAKGC--EHGHCDKPNQCVCQLGWKGALCNECVLEPNCIHGTCN 272
            ...|.:.||.||:|:||..|.|..||  ::|:|:||.:|.|:.||:|..||||:....|.||||.
 Frog   192 EPDGRVSCLKGWKGEYCAEPICLDGCSEQNGYCNKPGECTCRPGWQGRFCNECIPHNGCRHGTCQ 256

  Fly   273 KPWTCICNEGWGGLYCNQDLNYCTNHRPCKNGGTCFNTGEGLYTCKCAPGYSGDDCENEIYSCDA 337
            ..|.|||:||||||:|:|||||||:|:|||||.||.|||:|.|||.|.||:||.:||::|..||:
 Frog   257 IQWQCICDEGWGGLFCDQDLNYCTHHKPCKNGATCMNTGQGSYTCSCPPGFSGVNCEDKIRECDS 321

  Fly   338 DVNPCQNGGTCIDEPHTKTGYKCHCANGWSGKMCEEKVLTCSDKPC-HQGICRNVRPGLGSKGQG 401
              |||:|||:|.|   .:.||:|.|..|:.|..||:.||.|.:.|| :.|.||.     ...|..
 Frog   322 --NPCRNGGSCRD---LENGYRCECPQGYDGSHCEKSVLNCGNSPCFNGGTCRE-----REVGAS 376

  Fly   402 YQCECPIGYSGPNCDLQLDNCSPNPCINGGSCQPSGK---CICPAGFSGTRCETNIDDCLGHQCE 463
            |.|:||:|::|.||:.::|.|:.|||:|||.|...||   |.|..||:|..|..|||||..:.|.
 Frog   377 YTCQCPLGFTGSNCEKKVDKCTRNPCLNGGQCFDFGKTQLCRCRPGFTGPTCAINIDDCAKNPCL 441

  Fly   464 NGGTCIDMVNQYRCQCVPGFHGTHCSSKVDLCLIRPCANGGTCLNLNNDYQCTCRAGFTGKDCSV 528
            |||.|.|.||.|.|.|.||:.|..|:.|...|:: ||.|||||.....|..|.|..||.|..|..
 Frog   442 NGGICTDAVNDYYCDCPPGYRGRTCNVKTIECIL-PCMNGGTCYIGPYDNNCDCPPGFMGSLCEN 505

  Fly   529 DIDE----------------------C---------SSGPCHNGGTCMNRVNSFE 552
            .|:.                      |         ...|.|...| ||.::.|:
 Frog   506 PIEPKVDFPWVAVFMGAGFVGVLVLLCMVIITFRHFRKQPLHESNT-MNNLSDFQ 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DlNP_001247193.1 MNNL 23..96 CDD:284966 30/72 (42%)
DSL 164..226 CDD:279722 26/62 (42%)
EGF_CA 291..329 CDD:238011 26/37 (70%)
EGF_CA 337..372 CDD:238011 14/34 (41%)
EGF_CA 453..488 CDD:238011 19/34 (56%)
EGF_CA 492..526 CDD:238011 14/33 (42%)
EGF_CA 529..564 CDD:238011 8/55 (15%)
dll4XP_002939596.3 MNNL 24..86 CDD:400141 31/73 (42%)
DSL 145..208 CDD:396134 26/62 (42%)
EGF_CA 275..313 CDD:238011 26/37 (70%)
EGF_CA 316..351 CDD:238011 17/39 (44%)
EGF_CA 359..391 CDD:238011 13/36 (36%)
EGF 397..427 CDD:394967 15/29 (52%)
EGF_CA 431..466 CDD:238011 19/34 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 85 1.000 Domainoid score I8043
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 581 1.000 Inparanoid score I1005
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 1 1.000 - - FOG0002026
OrthoInspector 1 1.000 - - otm48695
Panther 1 1.100 - - LDO PTHR24044
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1332
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.