DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5250 and GABA-B-R1

DIOPT Version :9

Sequence 1:NP_650793.1 Gene:CG5250 / 42308 FlyBaseID:FBgn0038691 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster


Alignment Length:119 Identity:26/119 - (21%)
Similarity:41/119 - (34%) Gaps:43/119 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SGPYELGRLRRRRDMRVAEYLY-----RRSIRTRNADPEMTVCRFIKLLLY-------FIGFF-- 59
            |.|.:..|..||:|.|:...|:     ||           .:|...|..||       |||::  
  Fly   210 SDPTDAVRNLRRQDARIIVGLFYVVAARR-----------VLCEMYKQQLYGRAHVWFFIGWYED 263

  Fly    60 --FVLGVFTTGLALVMIANHIYPDRPGCKKFPGLATAPGHHVGDQKQIMWSPNN 111
              :.:.:...|:...:....|              .|.||..  .:.:||:.||
  Fly   264 NWYEVNLKAEGITCTVEQMRI--------------AAEGHLT--TEALMWNQNN 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5250NP_650793.1 Na_K-ATPase <143..281 CDD:298651
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361 26/119 (22%)
ANF_receptor 52..415 CDD:279440 26/119 (22%)
7tm_3 476..730 CDD:278433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3927
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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