DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and pitpnc1

DIOPT Version :9

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_001039199.1 Gene:pitpnc1 / 734057 XenbaseID:XB-GENE-959703 Length:329 Species:Xenopus tropicalis


Alignment Length:263 Identity:108/263 - (41%)
Similarity:162/263 - (61%) Gaps:13/263 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIKEFRVTLPLTVEEYQVAQLFSVAEASKENTGGGEGIEVLKNEPFEDFPLLGGKYNSGQYTYK 65
            |.:||:|:.:|||||||::.||:.:::.|.|.:..|||:||::|||:|| |:.|    .||.|.|
 Frog     1 MLLKEYRICMPLTVEEYRIGQLYMISKHSHEQSERGEGVEVVQNEPYED-PVHG----QGQLTEK 60

  Fly    66 IYHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGYMDKNFKIDIYSQHIENDLGTVD 130
            ..:|.||:|::.|.:.|| ...:.|:|||.|||..|..| ..::.| |.|.|.::: |::.|:.|
 Frog    61 RVYLNSKLPSWARAVVPK-IFYVTEKAWNYYPYTITEYT-CSFLPK-FSIHIETKY-EDNKGSND 121

  Fly   131 NVHELTPDKLKVREIVHIDIANDPVLPADYKPDEDPTTYQSKKTGRGPLVGSDWKKHVNPVMTCY 195
            |:.| :..|...|||..:|||.|.:....||..|||..:.|:|||||.| ...|::...|:|..|
 Frog   122 NIFE-SEAKDAEREICFVDIACDEIPERYYKESEDPKNFVSEKTGRGQL-KEGWREAQEPIMCSY 184

  Fly   196 KLVTCEFKWFGLQTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQTKEELDKAR 260
            |||..:|:.:|||:|||.|:.|..|.:....|||.|...|.||.:||:::|..|..|:|..:  |
 Frog   185 KLVAVKFEVWGLQSRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREYERTTQEATN--R 247

  Fly   261 QVG 263
            ::|
 Frog   248 KIG 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 105/258 (41%)
pitpnc1NP_001039199.1 SRPBCC_PITPNC1_like 2..250 CDD:176899 106/260 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..329
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D951268at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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