DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and Pitpnc1

DIOPT Version :9

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_038943358.1 Gene:Pitpnc1 / 498015 RGDID:1597047 Length:414 Species:Rattus norvegicus


Alignment Length:255 Identity:104/255 - (40%)
Similarity:158/255 - (61%) Gaps:11/255 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIKEFRVTLPLTVEEYQVAQLFSVAEASKENTGGGEGIEVLKNEPFEDFPLLGGKYNSGQYTYK 65
            |.:||:|:.:||||:||::.||:.:::.|.|.:..|||:||::||||||     ..:.:||:|.|
  Rat     1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFED-----PHHGNGQFTEK 60

  Fly    66 IYHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGYMDKNFKIDIYSQHIENDLGTVD 130
            ..:|.||:|::.|.:.|| ...:.|:|||.|||..|..| ..::.| |.|.|.::: |::.|:.|
  Rat    61 RVYLNSKLPSWARAVVPK-IFYVTEKAWNYYPYTITEYT-CSFLPK-FSIHIETKY-EDNKGSND 121

  Fly   131 NVHELTPDKLKVREIVHIDIANDPVLPADYKPDEDPTTYQSKKTGRGPLVGSDWKKHVNPVMTCY 195
            ::.:.....|: ||:..||||.|.:....||..|||..::|:|||||.| ...|:.:..|:|..|
  Rat   122 SIFDSEAKDLE-REVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQL-REGWRDNHQPIMCSY 184

  Fly   196 KLVTCEFKWFGLQTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQTKEE 255
            ||||.:|:.:|||||||.|:.|..|.:....|||.|...|.||.:||:|:|..|....|:
  Rat   185 KLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKNMHEQ 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 103/254 (41%)
Pitpnc1XP_038943358.1 SRPBCC_PITPNC1_like 2..250 CDD:176899 103/254 (41%)
PspC_subgroup_2 <292..>414 CDD:411408
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D951268at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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