DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and Lpin3

DIOPT Version :10

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_038961442.1 Gene:Lpin3 / 362261 RGDID:1588534 Length:845 Species:Rattus norvegicus


Alignment Length:278 Identity:56/278 - (20%)
Similarity:93/278 - (33%) Gaps:90/278 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIKEFRVTLP-LTVEEYQVAQL---------------FSVAEASKENTGG------GEGIEVLK 43
            :.::.|:..|| .||::.|..::               |...|.|.:....      ||..|||.
  Rat   492 LSLQAFQKNLPESTVDKLQKEKMPRKGGRWWFSWRRRDFPAEERSAQREKAATRKQQGEKTEVLS 556

  Fly    44 NEPFEDFPLLGGKYNSGQYTYKIYHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGY 108
            ::  :|.|       ......::..|.|..|.|:...  |.||.:...      ..|.:..|.|.
  Rat   557 SD--DDVP-------DSPVILEVPPLPSSTPGYVPTY--KKSLRLSSN------QIRCLNLNEGA 604

  Fly   109 MDKNFKIDIYSQHIENDLGTVDNVHELTPDKLKVREIVHIDIANDPVLPADYKPDEDPTTYQSKK 173
            .|..|.:....|      ||           .:.:..:::...:|.|:.:|.    |.|..:|..
  Rat   605 NDVVFSVTTQYQ------GT-----------CRCKATIYLWNWDDKVVISDI----DGTITKSDA 648

  Fly   174 TGR-GPLVGSDW----------KKHVNPVMTCYKLVTCEFKWFGLQTRVENFIQ----------- 216
            .|. .|.:|.||          |.|:|.    ||.:.|..:..|:....:.::|           
  Rat   649 LGHILPQLGKDWTHQGITSLYHKIHLNG----YKFLYCSARAIGMAHLTKGYLQWVSEHGCGLPK 709

  Fly   217 ----KSERRLFTNFHRQV 230
                .|...||:..||:|
  Rat   710 GPILLSPSSLFSALHREV 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 56/277 (20%)
Lpin3XP_038961442.1 Lipin_N 1..107 CDD:461356
Lipin_mid 432..525 CDD:465292 6/32 (19%)
LNS2 586..811 CDD:462403 35/173 (20%)
Blue background indicates that the domain is not in the aligned region.

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