DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and Lpin

DIOPT Version :10

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_610359.2 Gene:Lpin / 35790 FlyBaseID:FBgn0263593 Length:1089 Species:Drosophila melanogaster


Alignment Length:266 Identity:55/266 - (20%)
Similarity:81/266 - (30%) Gaps:117/266 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 TNPGYMDKNFKIDIYSQHIENDLGTVDNVHELTP-----------------------DKLKVRE- 144
            |:|...|..........:.||....|||:.|||.                       .||.::| 
  Fly   713 TSPDITDPTLSKSDSLVNAENTSALVDNLEELTMASNKSDEPKERYKKSLRLSSAAIKKLNLKEG 777

  Fly   145 IVHIDIA--------------------NDPVLPADYKPDEDPTTYQSKKTGR-GPLVGSDW---- 184
            :..|:.:                    ||.|:.:|.    |.|..:|...|. .|:||.||    
  Fly   778 MNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVISDI----DGTITKSDVLGHILPMVGKDWAQLG 838

  Fly   185 ------KKHVNPVMTCYKLVTCEFKWFGLQTRVENFIQKSERR----------------LFTNFH 227
                  |...|.    |||:....:..| |:||.....:|.|:                |.:.||
  Fly   839 VAQLFSKIEQNG----YKLLYLSARAIG-QSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISAFH 898

  Fly   228 RQVF----------CSTD------------RWYGLTMEDI---RAI------------EDQTKEE 255
            |:|.          |.:|            ..||..:.|:   ||:            :.:.|.|
  Fly   899 REVIEKKPEQFKIACLSDIRDLFPDKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHE 963

  Fly   256 LDKARQ 261
            |.:..|
  Fly   964 LTQTFQ 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 54/264 (20%)
LpinNP_610359.2 Lipin_N 1..104 CDD:461356
Lipin_mid 562..674 CDD:465292
LNS2 760..985 CDD:462403 44/219 (20%)
Blue background indicates that the domain is not in the aligned region.

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