DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and Y54F10AR.1

DIOPT Version :9

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_497582.3 Gene:Y54F10AR.1 / 190268 WormBaseID:WBGene00021854 Length:270 Species:Caenorhabditis elegans


Alignment Length:270 Identity:163/270 - (60%)
Similarity:203/270 - (75%) Gaps:4/270 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIKEFRVTLPLTVEEYQVAQLFSVAEASKENTGGGEGIEVLKNEPFEDFPLLGGKYNSGQYTYK 65
            |.|||:||.||::||||||.||:|||||||..||||||:||||||||::.|||.|::..||||:|
 Worm     1 MIIKEYRVVLPMSVEEYQVGQLWSVAEASKAETGGGEGVEVLKNEPFDNVPLLNGQFTKGQYTHK 65

  Fly    66 IYHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGYMDKNFKIDIYSQHIENDLGTVD 130
            ||||||||||.:|.:||||||.||||||||||||:|::|||.||.:||.:.|.:.|:. |.||.:
 Worm    66 IYHLQSKVPAILRKIAPKGSLAIHEEAWNAYPYCKTVVTNPDYMKENFYVKIETIHLP-DNGTTE 129

  Fly   131 NVHELTPDKLKVREIVHIDIANDP--VLPADYKPDEDPTTYQSKKTGRGPLVGSDWKKHVNPVMT 193
            |.|.|..|:|..||:|:|:||||.  :...|..||..|:.:||.|||||||.| :||..|.|||.
 Worm   130 NAHGLKGDELAKREVVNINIANDHEYLNSGDLHPDSTPSKFQSTKTGRGPLSG-NWKDSVQPVMC 193

  Fly   194 CYKLVTCEFKWFGLQTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQTKEELDK 258
            .|||||..|||||.|..|||:......|||:.|||:|||..|:|:||||.|||.||.:.::||::
 Worm   194 AYKLVTVYFKWFGFQKIVENYAHTQYPRLFSKFHREVFCWIDKWHGLTMVDIREIEAKAQKELEE 258

  Fly   259 ARQVGEVRGM 268
            .|:.|:||||
 Worm   259 QRKSGQVRGM 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 156/260 (60%)
Y54F10AR.1NP_497582.3 SRPBCC 2..261 CDD:301327 156/260 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 314 1.000 Domainoid score I696
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4533
Inparanoid 1 1.050 331 1.000 Inparanoid score I1431
Isobase 1 0.950 - 0 Normalized mean entropy S2729
OMA 1 1.010 - - QHG54293
OrthoDB 1 1.010 - - D522789at33208
OrthoFinder 1 1.000 - - FOG0002025
OrthoInspector 1 1.000 - - oto18243
orthoMCL 1 0.900 - - OOG6_103092
Panther 1 1.100 - - LDO PTHR10658
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4220
SonicParanoid 1 1.000 - - X1329
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.820

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