DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and lpin-1

DIOPT Version :9

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_506380.2 Gene:lpin-1 / 179853 WormBaseID:WBGene00010425 Length:794 Species:Caenorhabditis elegans


Alignment Length:339 Identity:58/339 - (17%)
Similarity:109/339 - (32%) Gaps:100/339 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QIKEFRVTLPL--------------------------TVEEYQVAQLFSVAEASKENTGGGEG-- 38
            |:.::.:|.||                          |..|.:...:..:|::...:..||:|  
 Worm    91 QVPDYLLTSPLPEQETPQTAGPAVDKVLAESARKLEETQNENEDVDMNDIAKSRSSSPDGGQGNA 155

  Fly    39 -----------IEVLKNEPFE-------------DFPLLGG---------KYNSGQYTYK----I 66
                       ::..:..||.             |..:|..         |.:.|:.|.|    .
 Worm   156 REPKQEQSLSQVQRKQTLPFSSSVFSDRRYRSLPDLTVLAAETEVERTDIKKSDGKRTRKTPRPF 220

  Fly    67 YHLQSKVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGYMDKNFKIDIYSQHIENDLGTVDN 131
            .|..|:.....:....|.:.||          .|::......||:...:...|:...|...|   
 Worm   221 VHSHSQCSPMEKKHFHKSNDEI----------LRSLRRETHDMDRRIPLRKKSRVTFNQQAT--- 272

  Fly   132 VHELTPDKLKVREIVHIDIANDPVLPADYKPDEDPTTYQSKKTGR---GPLVGSDWKKHVNPVMT 193
                .|..:|:::  :.|  :|..|.:.......|:....::..|   |.|..|:..:..:...|
 Worm   273 ----RPIDIKIQQ--YND--SDSELDSSVNSSPSPSLVDQREADRIADGALSDSEVDRQRDRNAT 329

  Fly   194 CYKLVTCEFKWFGL-QTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQTKEELD 257
            .......::||..| :||.:|..:|.:        .....||.||.........:..|:.::|.:
 Worm   330 PEPHDVTDWKWGELPETREQNKRKKQD--------EDAEKSTSRWSSWFWRSSTSTADEEQKEKE 386

  Fly   258 KARQVGEVRGMRAD 271
            |..|  |.:|:..|
 Worm   387 KLEQ--EEQGISLD 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 54/327 (17%)
lpin-1NP_506380.2 SMP2 1..736 CDD:227415 58/339 (17%)
LNS2 508..732 CDD:369773
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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