DRSC/TRiP Functional Genomics Resources

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Protein Alignment vib and pitpna

DIOPT Version :9

Sequence 1:NP_001262726.1 Gene:vib / 42306 FlyBaseID:FBgn0267975 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_017946525.1 Gene:pitpna / 100038215 XenbaseID:XB-GENE-489205 Length:274 Species:Xenopus tropicalis


Alignment Length:273 Identity:165/273 - (60%)
Similarity:203/273 - (74%) Gaps:15/273 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVTLPLTVEEYQVAQLFSVAEASKENTGGGEGIEVLKNEPFEDFPLLGGKYNSGQYTYKIYHLQS 71
            ||.||::||||||.||:|||||||..||||||:|||.|||:|.    .|:  .||||:|||||||
 Frog    11 RVILPVSVEEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK----DGE--KGQYTHKIYHLQS 69

  Fly    72 KVPAYIRLLAPKGSLEIHEEAWNAYPYCRTIITNPGYMDKNFKIDIYSQHIENDLGTVDNVHELT 136
            |||.::|:|||:|:|.|||:||||||||||||||. ||..:|.|.|.:.| :.|||..:|||:|.
 Frog    70 KVPMFVRMLAPEGALNIHEKAWNAYPYCRTIITNE-YMKDDFLIKIETWH-KPDLGMQENVHKLE 132

  Fly   137 PDKLKVREIVHIDIAN-DPVLPADYKPDEDPTTYQSKKTGRGPLVGSDWKKHVN-----PVMTCY 195
            ||..|..|:|.||||: ..||..||||:|||..::|.|||||||. .||||.:.     |.|..|
 Frog   133 PDVWKNVEVVQIDIADRSQVLTKDYKPEEDPAKFKSVKTGRGPLC-PDWKKTLGQQKDCPHMCAY 196

  Fly   196 KLVTCEFKWFGLQTRVENFIQKSERRLFTNFHRQVFCSTDRWYGLTMEDIRAIEDQTKEELDKAR 260
            ||||.:|||:|||.::|:||||.|:|||||||||:||..|||..|||||||.:||:||::||:.|
 Frog   197 KLVTVKFKWWGLQNKIESFIQKQEKRLFTNFHRQLFCWLDRWVELTMEDIRRMEDETKKQLDEMR 261

  Fly   261 QVGEVRGMRADAD 273
            :...|:||.|..|
 Frog   262 ERDPVKGMMAADD 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vibNP_001262726.1 SRPBCC_PITPNA-B_like 2..261 CDD:176897 159/259 (61%)
pitpnaXP_017946525.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 300 1.000 Domainoid score I1410
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 318 1.000 Inparanoid score I2493
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D522789at33208
OrthoFinder 1 1.000 - - FOG0002025
OrthoInspector 1 1.000 - - otm49334
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1329
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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