DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cry and Cry1

DIOPT Version :9

Sequence 1:NP_732407.1 Gene:cry / 42305 FlyBaseID:FBgn0025680 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_942045.2 Gene:Cry1 / 299691 RGDID:735083 Length:588 Species:Rattus norvegicus


Alignment Length:525 Identity:213/525 - (40%)
Similarity:298/525 - (56%) Gaps:48/525 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GANVI-WFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDID 68
            |.|.: |||.||||||||||...:...|   .:..|:|.|...||:.|||.||.||||..|:|:|
  Rat     2 GVNAVHWFRKGLRLHDNPALKECIQGAD---TIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63

  Fly    69 DQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFV 133
            ..|:..   ..||.|..|:||.:|.||.::..:.::.||.|.||...|||.:|:.|..|..::.:
  Rat    64 ANLRKL---NSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVI 125

  Fly   134 EKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKL 198
            .::||||:|...:||.|||.|||||:.|...|..:. |....||....|               :
  Rat   126 VRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKME-PLEMPADTITSD---------------V 174

  Fly   199 FEQLPTP---EHFNVYG----DNMGF----LAKINWRGGETQALLLLDERLKVEQHAFERGFYLP 252
            ..:..||   :|...||    :.:||    |:...|.||||:||..|:..|  |:.|:...|..|
  Rat   175 IGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHL--ERKAWVANFERP 237

  Fly   253 NQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREY 317
            .....::..||..:|.:|||||||.|.||:.:.||:|.|:..:       :....:.|||:|||:
  Rat   238 RMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNS-------SPPLSLYGQLLWREF 295

  Fly   318 FYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRN 382
            |||.:.|||.:|:||||.||:.|||.| |...|..|..|:||||.||..|.||..|||:||..|:
  Rat   296 FYTAATNNPRFDKMEGNPICVQIPWDK-NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARH 359

  Fly   383 TVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVS-SSAFERLLDSSLVTCPVALAKR 446
            .||.|||||.||.|||.|::.|.:.|||||||:.||:|||:| ||.|::...   ..|||...:|
  Rat   360 AVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFH---CYCPVGFGRR 421

  Fly   447 LDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKS 511
            .||:|.||::|:|.|...|.:::::||......|:..:|||||:||:.:::.:.|.:.|:..||.
  Rat   422 TDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486

  Fly   512 LRNSL 516
            :...|
  Rat   487 IYQQL 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cryNP_732407.1 PhrB 4..504 CDD:223492 209/511 (41%)
DNA_photolyase 8..175 CDD:279247 70/167 (42%)
FAD_binding_7 310..510 CDD:281440 97/200 (49%)
Cry1NP_942045.2 DNA_photolyase 5..167 CDD:279247 70/168 (42%)
PhrB 6..491 CDD:223492 210/519 (40%)
LIR 1. /evidence=ECO:0000250|UniProtKB:P97784 50..54 2/3 (67%)
LIR 2. /evidence=ECO:0000250|UniProtKB:P97784 82..87 1/4 (25%)
LIR 3. /evidence=ECO:0000250|UniProtKB:P97784 151..156 1/4 (25%)
FAD_binding_7 213..486 CDD:281440 126/285 (44%)
LIR 4. /evidence=ECO:0000250|UniProtKB:P97784 255..260 4/4 (100%)
LIR 5. /evidence=ECO:0000250|UniProtKB:P97784 271..276 3/4 (75%)
LIR 6. /evidence=ECO:0000250|UniProtKB:P97784 285..290 1/4 (25%)
LIR 7. /evidence=ECO:0000250|UniProtKB:P97784 335..339 3/3 (100%)
Required for inhibition of CLOCK-ARNTL/BMAL1-mediated transcription. /evidence=ECO:0000250|UniProtKB:P97784 371..470 45/101 (45%)
LIR 8. /evidence=ECO:0000250|UniProtKB:P97784 379..384 1/4 (25%)
LIR 9. /evidence=ECO:0000250|UniProtKB:P97784 395..400 3/4 (75%)
LIR 10. /evidence=ECO:0000250|UniProtKB:P97784 411..416 1/7 (14%)
LIR 11. /evidence=ECO:0000250|UniProtKB:P97784 430..435 1/4 (25%)
Interaction with TIMELESS. /evidence=ECO:0000250|UniProtKB:P97784 471..493 5/21 (24%)
LIR 12. /evidence=ECO:0000250|UniProtKB:P97784 486..491 0/4 (0%)
LIR 13. /evidence=ECO:0000250|UniProtKB:P97784 492..497 213/525 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 511..588
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X403
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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