DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cry and Cry2

DIOPT Version :9

Sequence 1:NP_732407.1 Gene:cry / 42305 FlyBaseID:FBgn0025680 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_596896.2 Gene:Cry2 / 170917 RGDID:620935 Length:594 Species:Rattus norvegicus


Alignment Length:541 Identity:218/541 - (40%)
Similarity:304/541 - (56%) Gaps:50/541 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MATRGA-NVIWFRHGLRLHDNPALLAALADKDQGIALIP-VFIFDGESAGTKNVGYNRMRFLLDS 63
            |...|| :|.|||.|||||||||||||:    :|...:. |:|.|...|.:.:||.||.||||.|
  Rat    16 MGADGASSVHWFRKGLRLHDNPALLAAV----RGARCVRCVYILDPWFAASSSVGINRWRFLLQS 76

  Fly    64 LQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCREL 128
            |:|:|..|:..   ..||.|..|:||.:|.||.::..:.|:..|.|.||...|||.:|..:.:|.
  Rat    77 LEDLDTSLRKL---NSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 138

  Fly   129 NIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFC 193
            .::.|.:.||||:|...:||.||..|||||:.|...:..:.||.:|......:..       |.|
  Rat   139 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHM-------ENC 196

  Fly   194 RSLKLFEQLPTPEHFNVYG----DNMGF----LAKINWRGGETQALLLLDERLKVEQHAFERGFY 250
            |: ::.|     .|.:.||    :.:||    |....|:||||:||..||:.|  |:.|:...:.
  Rat   197 RA-EIQE-----NHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHL--ERKAWVANYE 253

  Fly   251 LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWR 315
            .|.....::..||..:|.:|||||||.|.||:.:.||::.|:..:       |....:.|||:||
  Rat   254 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNS-------TPPLSLFGQLLWR 311

  Fly   316 EYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTL 380
            |:|||.:.|||.:||||||.||:.|||.: |...|..|..|:||||.||..|.||..|||:||..
  Rat   312 EFFYTAATNNPRFDRMEGNPICIQIPWDR-NPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 375

  Fly   381 RNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAK 445
            |:.||.|||||.||.|||.|::.|.:.|||||:||.||:|||:|.|||.:......  |||...:
  Rat   376 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCY--CPVGFGR 438

  Fly   446 RLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMK 510
            |.||.|.||::|:|:|...|..:::|||......|:..:|:|||.||..|::.:...:.|:..||
  Rat   439 RTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMK 503

  Fly   511 SLRNS--------LITPPPHC 523
            .:...        |:...|.|
  Rat   504 QIYQQLSRYRGLCLLASVPSC 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cryNP_732407.1 PhrB 4..504 CDD:223492 211/509 (41%)
DNA_photolyase 8..175 CDD:279247 72/167 (43%)
FAD_binding_7 310..510 CDD:281440 97/199 (49%)
Cry2NP_596896.2 PhrB 21..509 CDD:223492 213/519 (41%)
DNA_photolyase 23..171 CDD:279247 69/154 (45%)
FAD_binding_7 231..504 CDD:281440 126/284 (44%)
Required for inhibition of CLOCK-ARNTL-mediated transcription. /evidence=ECO:0000250|UniProtKB:Q9R194 389..488 45/100 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 532..594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X403
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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