DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5555 and ATL3

DIOPT Version :9

Sequence 1:NP_001262724.1 Gene:CG5555 / 42302 FlyBaseID:FBgn0038686 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_177375.1 Gene:ATL3 / 843563 AraportID:AT1G72310 Length:324 Species:Arabidopsis thaliana


Alignment Length:251 Identity:48/251 - (19%)
Similarity:81/251 - (32%) Gaps:106/251 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 ELPTCPVCLERMDESVDGV----------------LTILCNHAFHASCLMKW--GDSTCPVCRHV 293
            ||.:.|:...|.|...||:                |...|||:||..|:..|  ..||||:||:.
plant   107 ELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT 171

  Fly   294 -------------QTPGLVEDSVCMECEGTDSLWICLICGHVGCGRYQGGHAAAHFRATNHTFAM 345
                         |.|...|::      ||.:                          .||....
plant   172 VLGPEQASSKRVEQVPDNAENA------GTTN--------------------------NNHDALS 204

  Fly   346 QLGTSS--------VW-----------------DYAGDNFVHRLFQNKSDGKLVASQTEKDEREE 385
            ||.|||        ||                 |.|..|..     ::|...:|...::...|..
plant   205 QLSTSSPEFPTNVLVWGRQDQVSTGNTNVGTQEDGAAGNGA-----SQSQEAVVLDISDSSSRNH 264

  Fly   386 KIDSMQMEFTYL---------LTSQLDTQRKYYEERMERLEQEWQNHKATANDAKT 432
            .:.|......::         :|::|.:.|::    :.|.::...::.:|:|.:.:
plant   265 NVSSSSSSMRFIVEEEEAKSPMTTRLRSLRRF----LSRDKRVGCSNSSTSNSSSS 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5555NP_001262724.1 RRM_BRAP2 150..234 CDD:241162
zf-RING_2 249..291 CDD:290367 17/59 (29%)
zf-UBP 304..363 CDD:280334 14/83 (17%)
CENP-F_leu_zip 366..517 CDD:287450 10/76 (13%)
DUF4200 396..517 CDD:290574 6/46 (13%)
ATL3NP_177375.1 RING-H2_EL5_like 126..169 CDD:319375 12/42 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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