DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5555 and brap

DIOPT Version :9

Sequence 1:NP_001262724.1 Gene:CG5555 / 42302 FlyBaseID:FBgn0038686 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001002466.1 Gene:brap / 436739 ZFINID:ZDB-GENE-040718-168 Length:578 Species:Danio rerio


Alignment Length:604 Identity:239/604 - (39%)
Similarity:354/604 - (58%) Gaps:81/604 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NISLCVIKIETDLDPSADSEG----AVS--AEHPTNPRVL----------KERERDR------GL 49
            ::||.||::|. .|.|...:|    |||  :|.....:.|          .:.||..      |.
Zfish     2 SVSLVVIRLEL-ADQSDSPQGFHYCAVSEMSEDEMREKALGSAKATLGGKTDLERGAILHQHLGS 65

  Fly    50 RQSRDITIETYTNQRWKRELSEPRQQEMNWVAAVQHVNSPSAGS--SREITPRSGDDGQAGASAS 112
            |...|:.|||:                           .||.|:  .:|:.....|......|.|
Zfish    66 RVMSDMVIETF---------------------------QPSTGAEEGKEVDVSQTDVNMTPDSPS 103

  Fly   113 -NFPQEIGYFSGNPIVEVTKGLIHLYKKNERKAIKE--APSNQLCLLAVPATLNCHDLLNFIAPC 174
             ..|.:|.:|||||.||:..|::||||.|:..::.|  ..|..||:|.||.|:..|||:.|:||.
Zfish   104 KQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLTEDVRRSAMLCILTVPTTMTSHDLMKFVAPY 168

  Fly   175 HAEIKHIQIVRDGSPNQFMVLLEFRSNESALEFYKSYNGSTYNSLEPDSLCHAVWV--SEVERSE 237
            :..::|::|:||.:|||:|||::|||...|..||.:.||..:||:| |::|..|:|  :||.:||
Zfish   169 NDVMEHMKIIRDSTPNQYMVLVKFRSQADADSFYTTRNGRQFNSIE-DAVCQLVYVERAEVIKSE 232

  Fly   238 HGA--PPMGHTELPTCPVCLERMDESVDGVLTILCNHAFHASCLMKWGDSTCPVCRHVQTPGLVE 300
            .||  |.|..||||.|.||||||||||:||||.||||:||:.||.:|.|::|||||:.|||..||
Zfish   233 EGASLPVMDLTELPKCTVCLERMDESVNGVLTTLCNHSFHSQCLQRWEDASCPVCRYCQTPEPVE 297

  Fly   301 DSVCMECEGTDSLWICLICGHVGCGRYQGGHAAAHFRATNHTFAMQLGTSSVWDYAGDNFVHRLF 365
            ::.|.||...::|||||||||:|||||...||..||..|.||:||||....||||||||:||||.
Zfish   298 ENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLV 362

  Fly   366 QNKSDGKLVASQTEKDE-REEKIDSMQMEFTYLLTSQLDTQRKYYEERMERLE----QEWQNHKA 425
            .:|:|||:|..:.|.|. ::||||::|:|::|||||||::||.|:|.::..||    :|..|.||
Zfish   363 ASKTDGKMVQYECEGDTCQDEKIDALQLEYSYLLTSQLESQRIYWENKIVHLEKDTAEEINNMKA 427

  Fly   426 TANDAKTEVSELQQLQQNMQKEKVNLERKLAQHTAKLKDVQKQLNEERELSKALQSNQSSWHGKY 490
            ...:...:...|::....:.|:|.::::|.:|...|:..:.::|.||:|:::.|::|||....:.
Zfish   428 KFKETIDKCDSLERKLNELAKDKQSIDKKCSQLNNKVAKLSQELREEQEMNRCLRANQSQLQAQL 492

  Fly   491 KLLEQQYNEFKQTHDAEVTELKEQLRDIMFFLDNQQKL----ANT--EIAGGTV---TGIAEKEP 546
            :..|::..:.....|.::.||:|||||:||:|:.||::    |:|  ||..|.:   :..|..:|
Zfish   493 QEEERRVQDTAANKDDQIAELQEQLRDVMFYLETQQQIDRMPADTRQEIQEGQINIASAPAAPQP 557

  Fly   547 DPN-------TRRRNRRKK 558
            .|:       |.|:.|.|:
Zfish   558 GPSAHGSGKMTGRKGRSKR 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5555NP_001262724.1 RRM_BRAP2 150..234 CDD:241162 39/85 (46%)
zf-RING_2 249..291 CDD:290367 29/41 (71%)
zf-UBP 304..363 CDD:280334 37/58 (64%)
CENP-F_leu_zip 366..517 CDD:287450 51/155 (33%)
DUF4200 396..517 CDD:290574 38/124 (31%)
brapNP_001002466.1 RRM_BRAP2 144..227 CDD:241162 38/83 (46%)
RING 247..288 CDD:238093 28/40 (70%)
zf-UBP 301..363 CDD:280334 40/61 (66%)
V_ATPase_I 411..>499 CDD:279793 21/87 (24%)
ATP-synt_B <460..>554 CDD:304375 28/93 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593089
Domainoid 1 1.000 116 1.000 Domainoid score I5946
eggNOG 1 0.900 - - E1_KOG0804
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4926
Inparanoid 1 1.050 412 1.000 Inparanoid score I1826
OMA 1 1.010 - - QHG55462
OrthoDB 1 1.010 - - D278227at33208
OrthoFinder 1 1.000 - - FOG0005004
OrthoInspector 1 1.000 - - oto41121
orthoMCL 1 0.900 - - OOG6_102472
Panther 1 1.100 - - LDO PTHR24007
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R400
SonicParanoid 1 1.000 - - X3020
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.