DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqz and ZNF3

DIOPT Version :10

Sequence 1:NP_524403.1 Gene:sqz / 42300 FlyBaseID:FBgn0010768 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001305065.1 Gene:ZNF3 / 7551 HGNCID:13089 Length:453 Species:Homo sapiens


Alignment Length:284 Identity:89/284 - (31%)
Similarity:121/284 - (42%) Gaps:84/284 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 TPHEQQEQKYDPNRSPPRQQMSSASGSGSNGSSPEEESRRGDGDQAKPYKCGSCSKSFANSSYLS 174
            ||..::.:||           :....|.:..|:.....|...||  :|:||..|||||..:|.|.
Human   172 TPRGERSEKY-----------NDFGNSFTVNSNLISHQRLPVGD--RPHKCDECSKSFNRTSDLI 223

  Fly   175 QHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHAG------------------- 220
            ||.|||.|.|||.|..|.:.|:|.|||.||.|.|||:|||:|...|                   
Human   224 QHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSALILHRRIHTGE 288

  Fly   221 -------CPKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEMTLLEHIPKHKDSKHLKTHICN 278
                   |.|.||..|.|..|.|.|..:||:.||.|.|.||...||:.|...|...   |.:.||
Human   289 KPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGE---KPYECN 350

  Fly   279 LCGKSYTQETYLQKHLQKHAEKAEKQ-----------------QH-------------------R 307
            .|||:::|.::|.:|.:.|.  .||.                 ||                   |
Human   351 ECGKAFSQSSHLYQHQRIHT--GEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFR 413

  Fly   308 HTAQVAAHQQ-HV---PASGIGLN 327
            :::.:..||: |.   |.:|||::
Human   414 YSSALVRHQRIHTGEKPLNGIGMS 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqzNP_524403.1 C2H2 Zn finger 160..180 CDD:275368 11/19 (58%)
COG5048 184..>288 CDD:227381 49/129 (38%)
C2H2 Zn finger 188..208 CDD:275368 10/19 (53%)
C2H2 Zn finger 216..238 CDD:275368 10/47 (21%)
C2H2 Zn finger 246..266 CDD:275368 9/19 (47%)
C2H2 Zn finger 277..297 CDD:275368 8/19 (42%)
ZNF3NP_001305065.1 KRAB 57..98 CDD:460171
COG5048 <182..360 CDD:227381 70/182 (38%)
C2H2 Zn finger 185..201 CDD:275368 3/15 (20%)
C2H2 Zn finger 209..229 CDD:275368 11/19 (58%)
C2H2 Zn finger 237..257 CDD:275368 10/19 (53%)
C2H2 Zn finger 265..285 CDD:275368 2/19 (11%)
C2H2 Zn finger 293..313 CDD:275368 8/19 (42%)
C2H2 Zn finger 321..341 CDD:275368 9/19 (47%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
zf-H2C2_2 361..386 CDD:463886 5/26 (19%)
C2H2 Zn finger 377..397 CDD:275368 2/19 (11%)
zf-H2C2_2 390..414 CDD:463886 2/23 (9%)
C2H2 Zn finger 405..425 CDD:275368 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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