DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqz and CG6808

DIOPT Version :9

Sequence 1:NP_524403.1 Gene:sqz / 42300 FlyBaseID:FBgn0010768 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001247055.1 Gene:CG6808 / 41394 FlyBaseID:FBgn0037921 Length:375 Species:Drosophila melanogaster


Alignment Length:302 Identity:76/302 - (25%)
Similarity:126/302 - (41%) Gaps:39/302 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LRSLGHLTTAQLVHDYKPFNISEFRQNVAERLDYSLKNGLVQHQQQMVMEQQPHPDQQQQQHLHH 88
            ||||    ..|.:.....|...|.:..:.::     |....|:....::|:.|...:.|:..|..
  Fly    77 LRSL----VRQTLSSASAFETLEDKDQLEQK-----KRARKQNISGRLIEENPINFKTQENALET 132

  Fly    89 PQQQQHPPQLKVS--------YSAPNSPPTPHEQ--------QEQKYDPNRSPPRQQMSSASGSG 137
            .:..:..|..|.|        .:|.|......|.        ..:..|.|.|....|.|||:...
  Fly   133 TKDDEILPINKFSSDFVFDLNVNAENEKDIHQEDYTISDMDLDREISDQNYSETYSQESSAATDS 197

  Fly   138 SNGSSPEEESRRGDGD---------QAKPYKCGSCSKSFANSSYLSQHTRIHLGIKPYRCEICQR 193
            ...:|.:..:.....|         :...|:|..||.::...|.|:.|:::|...|.::||:||:
  Fly   198 IQETSEDYHNLEPSADYVIDLGVACEPDKYRCKICSNTYRCLSQLNAHSQVHRKEKDHQCEVCQK 262

  Fly   194 KFTQLSHLQQHIRTHTGDKPYKCRHAGCPKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEMT 258
            .|....:|:.|:|||||:|||:|.:  |.:.|:..|..:.|.|.|..::|:.||.|.|.||...:
  Fly   263 TFRAACNLKTHMRTHTGEKPYQCCY--CSRRFADNSTHRKHERLHTNERPYACNICGKTFSLSSS 325

  Fly   259 LLEHIPKHKDSKHLKTHICNLCGKSYTQETYLQKHLQKHAEK 300
            ...|...|...   |:|.|.:|.|.:..:..|..|.:..|.:
  Fly   326 RNAHYYLHSSE---KSHKCLMCKKEFRLKHQLTAHEKSLAHR 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqzNP_524403.1 C2H2 Zn finger 160..180 CDD:275368 6/19 (32%)
zf-H2C2_2 172..197 CDD:290200 9/24 (38%)
zf-C2H2 186..208 CDD:278523 8/21 (38%)
C2H2 Zn finger 188..208 CDD:275368 8/19 (42%)
zf-C2H2_8 191..271 CDD:292531 29/79 (37%)
zf-H2C2_2 200..227 CDD:290200 13/26 (50%)
C2H2 Zn finger 216..238 CDD:275368 6/21 (29%)
C2H2 Zn finger 246..266 CDD:275368 7/19 (37%)
C2H2 Zn finger 277..297 CDD:275368 5/19 (26%)
CG6808NP_001247055.1 zf-AD 9..79 CDD:214871 1/1 (100%)
C2H2 Zn finger 229..249 CDD:275368 6/19 (32%)
zf-C2H2 255..277 CDD:278523 8/21 (38%)
C2H2 Zn finger 257..277 CDD:275368 8/19 (42%)
zf-H2C2_2 269..293 CDD:290200 12/25 (48%)
C2H2 Zn finger 285..305 CDD:275368 6/21 (29%)
zf-H2C2_2 299..321 CDD:290200 8/21 (38%)
C2H2 Zn finger 313..333 CDD:275368 7/19 (37%)
C2H2 Zn finger 341..359 CDD:275368 5/17 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24381
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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