DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqz and rn

DIOPT Version :9

Sequence 1:NP_524403.1 Gene:sqz / 42300 FlyBaseID:FBgn0010768 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster


Alignment Length:652 Identity:266/652 - (40%)
Similarity:298/652 - (45%) Gaps:218/652 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NGLVQHQQQMVMEQQPHPDQQQQQHLHHPQQQQHPPQLKVSYSAPNSPPTPHEQQEQK---YDPN 122
            ||.|.|.:.:.......|..:..||    ..:.||..||..|.|..:  ..|....||   .|.|
  Fly   333 NGNVDHAKDISDYNLWPPTPRSHQH----ASEHHPMSLKQEYEAKMN--DHHHNNLQKGHFLDDN 391

  Fly   123 R---------------------------------------------------------------- 123
            |                                                                
  Fly   392 RLEHHAVTGQGGLGLGASNGVGGGGGGASVVGNSSLGASSHHAVAAAHHHNQAVAAASAAALLVV 456

  Fly   124 ---------SPPRQQMSSASGSGSNGSS---------PEEESRRGDGD--------QAKPYKCGS 162
                     ..|....|.|.|..:.|.|         |:..|.:.|..        :||||||..
  Fly   457 PQPINASKMGGPGGVSSVAGGHATGGGSGRKYQCKMCPQIFSSKADLQLHTQIHMREAKPYKCTQ 521

  Fly   163 CSKSFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHAGCPKAFSQ 227
            |||:||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||
  Fly   522 CSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQ 586

  Fly   228 LSNLQSHSRCHQTDKPFKCNSCYKCFSDEMTLLEHIPKHKDSKHLKTHICNLCGKSYTQETYLQK 292
            |||||||||||||||||||||||||||||.:|||||||||:|||||||||..|||||||||||.|
  Fly   587 LSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTK 651

  Fly   293 HLQKHAEKAEKQQH---------RHTAQVAAHQQHVPASG--------------IGLNLQRQAMN 334
            |:|||||:.:|:..         ...|..||.....||:|              :||.....|.:
  Fly   652 HMQKHAERTDKRPPIVPGSAAAIAAAAAAAAGGSANPANGPPPPPNPAQHQRNNLGLPPVSIAPS 716

  Fly   335 DVNAAYWAKMGADSAAASLA-EAIQQQLPQAGGQPYGNFASLQQQHQQQQQELLHHQRLADTPGH 398
            |  ..||.|:..|||||:.| |.:.||..|...|     ...|||.|||||:..||..    |.|
  Fly   717 D--NGYWPKVSPDSAAAANAMEVMHQQQQQQQQQ-----QQQQQQQQQQQQQQAHHHH----PQH 770

  Fly   399 SHSPHEEAAGEDLVLRQSTPQHHLQQQQQQQQQQQAQQQQQAQH--------------------- 442
            ...|           :|..|....||||||||....|||...||                     
  Fly   771 GVPP-----------QQHVPPQQQQQQQQQQQHHHPQQQPPPQHSMEAHYAQPTAPNGSQSNGHG 824

  Fly   443 --------QPSP------------GP----------GNSAFTPLSATVAPPPHLQQHRGPPGSAA 477
                    .|.|            ||          .||||||:::.   ||||......|.:..
  Fly   825 AELQPHHRMPDPVREDIASTPSAVGPYDAASITKTTSNSAFTPINSM---PPHLNSLSHHPMAQR 886

  Fly   478 AYLY-----------QQNAAAAAAAFPTQLISLHQIRNYAHQPGAAGLIAGDHLALGLSAVNAAK 531
            .|||           |.|    |.|||.|||||||||||||||  |||:||:|| ||:| |...|
  Fly   887 PYLYDAISFPNKNVNQNN----ANAFPNQLISLHQIRNYAHQP--AGLMAGEHL-LGVS-VGPGK 943

  Fly   532 EK 533
            :|
  Fly   944 DK 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqzNP_524403.1 C2H2 Zn finger 160..180 CDD:275368 16/19 (84%)
zf-H2C2_2 172..197 CDD:290200 24/24 (100%)
zf-C2H2 186..208 CDD:278523 21/21 (100%)
C2H2 Zn finger 188..208 CDD:275368 19/19 (100%)
zf-C2H2_8 191..271 CDD:292531 74/79 (94%)
zf-H2C2_2 200..227 CDD:290200 24/26 (92%)
C2H2 Zn finger 216..238 CDD:275368 19/21 (90%)
C2H2 Zn finger 246..266 CDD:275368 17/19 (89%)
C2H2 Zn finger 277..297 CDD:275368 15/19 (79%)
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 3/19 (16%)
C2H2 Zn finger 519..539 CDD:275368 16/19 (84%)
zf-H2C2_2 531..556 CDD:290200 24/24 (100%)
zf-C2H2 545..567 CDD:278523 21/21 (100%)
C2H2 Zn finger 547..567 CDD:275368 19/19 (100%)
zf-C2H2_8 550..630 CDD:292531 74/79 (94%)
zf-H2C2_2 559..586 CDD:290200 24/26 (92%)
C2H2 Zn finger 575..597 CDD:275368 19/21 (90%)
C2H2 Zn finger 605..625 CDD:275368 17/19 (89%)
C2H2 Zn finger 636..656 CDD:275368 15/19 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 43 1.000 Domainoid score I12363
eggNOG 1 0.900 - - E33208_3BF42
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215629at33208
OrthoFinder 1 1.000 - - FOG0003260
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.820

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