DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqz and CG12605

DIOPT Version :9

Sequence 1:NP_524403.1 Gene:sqz / 42300 FlyBaseID:FBgn0010768 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster


Alignment Length:242 Identity:78/242 - (32%)
Similarity:112/242 - (46%) Gaps:60/242 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 QQQHLHHPQQ-QQHPPQLKV--------SYSAPNSPPTPHEQQEQKYDPNRSPPRQQMSSASGSG 137
            ||....:||| ||....||:        :.::..:..|..::||    |.:..|:...|:||..|
  Fly   346 QQWGKPNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQDRQE----PMQPRPKSAQSNASSGG 406

  Fly   138 SNGSSPEE-------ESRRGDGDQ-AKP----YKCGSCSKSFANSSYLSQHTRIHLGI------- 183
            ...|.|.|       .|..|:|:. ||.    |||..|.|.:|.||.||:|.:.|..:       
  Fly   407 GPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCCECGKQYATSSNLSRHKQTHRSLDSQSAKK 471

  Fly   184 -----KPY-----------------RCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHAGCPKAFS 226
                 |.|                 .|:||.:.|::...||.|:|:|||:|||.|.|  |.|||:
  Fly   472 CNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACVH--CGKAFA 534

  Fly   227 QLSNLQSHSRCHQTDKPFKCNSCYKCFSDEMTLLEHIPKHKDSKHLK 273
            ..|||::|.:.|..||.|||:.|.|.|:    |..::.||.:|..|:
  Fly   535 DRSNLRAHMQTHSGDKNFKCHRCNKTFA----LKSYLNKHLESACLR 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqzNP_524403.1 C2H2 Zn finger 160..180 CDD:275368 9/19 (47%)
zf-H2C2_2 172..197 CDD:290200 10/53 (19%)
zf-C2H2 186..208 CDD:278523 9/38 (24%)
C2H2 Zn finger 188..208 CDD:275368 8/19 (42%)
zf-C2H2_8 191..271 CDD:292531 35/79 (44%)
zf-H2C2_2 200..227 CDD:290200 16/26 (62%)
C2H2 Zn finger 216..238 CDD:275368 10/21 (48%)
C2H2 Zn finger 246..266 CDD:275368 5/19 (26%)
C2H2 Zn finger 277..297 CDD:275368
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 11/21 (52%)
C2H2 Zn finger 441..461 CDD:275370 9/19 (47%)
C2H2 Zn finger 472..492 CDD:275368 2/19 (11%)
COG5048 492..>570 CDD:227381 34/83 (41%)
zf-C2H2 496..518 CDD:278523 8/21 (38%)
C2H2 Zn finger 498..518 CDD:275368 8/19 (42%)
zf-H2C2_2 511..534 CDD:290200 15/24 (63%)
zf-C2H2 524..546 CDD:278523 11/23 (48%)
C2H2 Zn finger 526..546 CDD:275368 10/21 (48%)
zf-H2C2_2 538..562 CDD:290200 11/23 (48%)
C2H2 Zn finger 554..571 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457068
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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