DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqz and egrh-1

DIOPT Version :9

Sequence 1:NP_524403.1 Gene:sqz / 42300 FlyBaseID:FBgn0010768 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_510462.2 Gene:egrh-1 / 181580 WormBaseID:WBGene00007772 Length:461 Species:Caenorhabditis elegans


Alignment Length:318 Identity:75/318 - (23%)
Similarity:119/318 - (37%) Gaps:100/318 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TAPNGVPSGDYLHRSIDQLRSLGHLTTAQLVHDYKPFNISEFRQNVAER-----LDYSLKNGLVQ 65
            |.|.||.|..              |:.|  :..:.|. :..|.||:..:     |....|...:.
 Worm   160 TGPGGVDSPG--------------LSAA--MFQFSPM-VEHFLQNLTNKAGLPELVVDSKTAGLN 207

  Fly    66 HQQ-----------QMVMEQQPHPD----------QQQQQHL------HHPQQQQHP----PQLK 99
            ||:           :..:|.|...|          ..:..||      .|||....|    |:::
 Worm   208 HQEPSDLIKSVQVRRSSIEDQKFSDVLHVPTLPRKTSEPSHLGSSLQNEHPQSNSRPSTVIPRVQ 272

  Fly   100 -------VSYSAPNSPPTPHEQQEQKYDPNRS--------------------PPRQQMSSASGSG 137
                   ::.|..:|..:|....:..|..:.|                    |..:.|...|.:.
 Worm   273 RTNTSASLTRSMDHSSMSPISAHDDPYSNSASYSSLSTHTSFSDSASLAHFEPKTEPMDDYSYNF 337

  Fly   138 SNG-------SSPEEESRRGDGD---------QAKPYKC--GSCSKSFANSSYLSQHTRIHLGIK 184
            |:.       ||..||.:.....         |.:||||  ..|.:.|:.|..|::|.|||.|.|
 Worm   338 SDNDFNSFEFSSTSEELKNIGCQKMKSSKMPLQDRPYKCPRDGCDRRFSRSDELTRHIRIHTGQK 402

  Fly   185 PYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHAGCPKAFSQLSNLQSHSRCHQTDK 242
            |::|.||.|.|::..||..|:|||||:||:.|..  |.:.|::....:.|::.|:|.:
 Worm   403 PFQCRICMRAFSRSDHLTTHVRTHTGEKPFSCDI--CGRKFARSDERKRHTKVHKTSR 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqzNP_524403.1 C2H2 Zn finger 160..180 CDD:275368 7/21 (33%)
zf-H2C2_2 172..197 CDD:290200 13/24 (54%)
zf-C2H2 186..208 CDD:278523 9/21 (43%)
C2H2 Zn finger 188..208 CDD:275368 9/19 (47%)
zf-C2H2_8 191..271 CDD:292531 19/52 (37%)
zf-H2C2_2 200..227 CDD:290200 13/26 (50%)
C2H2 Zn finger 216..238 CDD:275368 4/21 (19%)
C2H2 Zn finger 246..266 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
egrh-1NP_510462.2 zf-C2H2 374..398 CDD:278523 9/23 (39%)
C2H2 Zn finger 376..398 CDD:275368 7/21 (33%)
zf-H2C2_2 390..415 CDD:290200 13/24 (54%)
C2H2 Zn finger 406..426 CDD:275368 9/19 (47%)
zf-H2C2_2 418..443 CDD:290200 13/26 (50%)
C2H2 Zn finger 434..454 CDD:275368 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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