DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp12a4 and cyp27c1

DIOPT Version :9

Sequence 1:NP_650783.2 Gene:Cyp12a4 / 42294 FlyBaseID:FBgn0038681 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001106808.2 Gene:cyp27c1 / 558396 ZFINID:ZDB-GENE-080204-68 Length:540 Species:Danio rerio


Alignment Length:573 Identity:148/573 - (25%)
Similarity:259/573 - (45%) Gaps:107/573 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LIQSQKATLSLATQKRWQTNVATAEAREDSEWLQAKPFEQIPRLNMWALSMKMSMPGGK------ 68
            |||:.....|:|:........:.|:.:|:|....|:..::..|:.    |:| .|||..      
Zfish    24 LIQTHGLHKSVASGSLEIAAHSQADLKEESAVSPAEEVQKAARVK----SLK-EMPGPSTVANLL 83

  Fly    69 -------YKNMELMEMFEAMRQDYGDIF---FMPGIMGNPPFLSTHNPQDFEV-VFRNEGVWPNR 122
                   :..:..::|..|.:  ||.||   |      .|.|:.:...:|... |.|:|...|.|
Zfish    84 EFFYRDGFSRIHEIQMEHAKK--YGKIFKSRF------GPQFVVSIADRDMVAQVLRSESATPQR 140

  Fly   123 PGNYTLLYHREEYRKDFYQGVMGVIPTQGKPWGDFRTVVNPVLMQPKNVRLYYKKMSQVNQEFVQ 187
             ||   :...:||| |......|:|..:|..|...|:|:..::|:|::|.::...::.|..:.|:
Zfish   141 -GN---MESWKEYR-DLRGRSTGLISAEGDEWLKMRSVLRQLIMRPRDVAVFSSDVNDVVADLVK 200

  Fly   188 RILELRDPDTLEAPDDFIDTIN------RWTLESVSVVALDKQLGLLKNS--NKESEALKLFHYL 244
            |:..||...     ||....:|      ::.:|.|:.:..:.:||.|:|.  ....|.:...|.:
Zfish   201 RVKTLRSQQ-----DDSQTVLNINDLFFKYAMEGVATILYETRLGCLENEIPKMSQEYITALHLM 260

  Fly   245 DEFFIVSIDL--------EMKPSPWRYIKTPKLKRLMRALDGIQEVTLAYVDEAIERLDK----- 296
            ...|..::..        .:.|.||        :....:.||:.:.:..:||:.:..:.|     
Zfish   261 FSSFKTTMYAGAIPKWLRPIIPKPW--------EEFCSSWDGLFKFSQIHVDKRLSEIKKQMEKS 317

  Fly   297 -EAKEG------VVRPENEQSVLEKLLKVDRKVATVMAMDMLMAGVDTTSSTFTALLLCLAKNPE 354
             |.|.|      |.|..|.:.:...:            .:||:|||||||.|.:.....||::|.
Zfish   318 EEIKGGLLTHMLVTREMNLEEIYANM------------TEMLLAGVDTTSFTLSWSTYLLARHPT 370

  Fly   355 KQARLREEVMKVLPNKNSEFTEASMKNVPYL---RACIKESQRLHPLIVGNARVLARDAVLSGYR 416
            .|.::.|||.:||..:     ..:.::||||   |..:||:.||.|::.||.||...|.::.||.
Zfish   371 IQQQIFEEVDRVLGGR-----VPTGEDVPYLPLIRGLVKETLRLFPVLPGNGRVTHDDLIVGGYL 430

  Fly   417 VPAGTYVNIVPLNALTRDEYFPQASEFLPERWLRSPKDSESKCPANELKSTNPFVFLPFGFGPRM 481
            :|.||.:.:...:....:|.||:..||.|:||:|  ||:..:        .:.|..:|||:|.|.
Zfish   431 IPKGTQLALCHYSTSMDEENFPRPEEFRPDRWIR--KDASDR--------VDNFGSIPFGYGIRS 485

  Fly   482 CVGKRIVEMELELGTARLIRNFNVEFN-YPTENAFRSALINLPNIPLKFKFID 533
            |:|:||.|:|:.|...:|::||::|.: ..||...::..:..|...:..:|.|
Zfish   486 CIGRRIAELEMHLALTQLLQNFHIEVSPQTTEVHAKTHGLLCPGASINLRFTD 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp12a4NP_650783.2 p450 72..531 CDD:299894 131/494 (27%)
cyp27c1NP_001106808.2 p450 74..517 CDD:306555 130/495 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 217 1.000 Domainoid score I2609
eggNOG 1 0.900 - - E2759_KOG0159
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3547
OMA 1 1.010 - - QHG48087
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6352
orthoMCL 1 0.900 - - OOG6_100895
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X156
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.780

Return to query results.
Submit another query.